| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2003 |
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| Symbol | |
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| ID | 4604253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2432403 |
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| End bp | 2434664 |
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| Gene Length | 2262 bp |
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| Protein Length | 753 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639781380 |
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| Product | inter-alpha-trypsin inhibitor domain-containing protein |
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| Protein accession | YP_927878 |
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| Protein GI | 119775138 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2304] Uncharacterized protein containing a von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0804312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.260211 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGATG ATAAGAGTAT GTATAGCCAA AGGAAGGTCG TGCCCAAGGT GGAGATGAAG
CAAGGCCTGA CTGCACTGGC AATGATGGCG TTGCTGGCAG CGCCAACAGT CAGCGCGAGC
TCAGCCAGCA CAGTGCAGCC CGTAACCTTG CCACTCGATG GTCCAATGGC TGGCCAGGGC
AGTACTTCGC CAGGCGACAT CATAGCACCG GGCCATGGCG GGGAGCTGAT GTTTGAAGAC
GAGGGCACGG AGCAAGTCAG TCTTGCCCTC GATACCCGCT ACACGGTTAA GGTCAGTGCC
TTGGTCAGCC GGGTTACAGT TTCTCAAACC TTTCAAAATC AGAGTAATAG AGTGATAAAC
GGCCACTACC GCTTTGCGCT GGCGCCCAAT GCGGCGGTGA GTGGCATGCG CCTTACAATC
GGCGAACGCC TGATTGAAGG AGAGATCCAG GAAAAAGCTC ACGCAGAGCG GGTATACGAG
CAAGCAAAAC GGGATGGTAA ACGGGCGAGC CTGGTCAGCC ACAGCGAAAG CAATCTTTTT
TCGACACGGA TTGCCAATTT CATGCCCGGC GAAACCCTTA CCGTCAGTAT CGATTATCAG
GAGATTCTGC ACCCACAAGC GGGCCGGGTT GAGCTCAGGA TCCCCACTGC ACAAACGCCA
AGGTATGGCG CCTCAGCAAT GCTGCCTTCG GCGCAGAACA GGATGCAGGA TGAGCCTTGG
GTATCCGGGG TGCAGGGCGC GGCGCAGAAC CATCTTCATG CCGCTGCGCC TTTTTGGCCC
GCCACCCGGG CAGAGGCTCC GGCAGACACG CCAACACCCT CGCTGTCACT CAGCGCCAGT
ATTTTTGGCT TTGCCGTGGC GGCGGTCGAA AGCCCATCCC ATGGCTTGTG TGAGCAAGGC
TATCGCGATG GTGGCTGGCA GTTATCGCTT TGCCCCGACA CCGAGGCTGA CAGGGATTTG
GTGCTGTCCT GGGTGATTAA CGAAGGCAGT GAGCCGGTTG CAGACTTTTT GGTGCAGCCG
GGCTACAGCT ATCCCGCCGC TGTGGAAAGC GCAAACACTC AGTATGGAAC TGCTCAGGAT
AAAGCCAAAC AGGATGAATA CGTCCGGGTA GATTTTTCCC AGGGGAATTA CAGCCACGGT
TTGCTGACCT TTATGCCACC TCAACCCAAT TTGGCCAATC GCCTGGCGCG GGAGCTGGTA
TTGGTGATCG ATACCTCAGG TTCCATGGCC GGAGACTCCA TGGTGCAGGC AAGAAGTGCC
CTTATCCACG CGCTCGGCGG TTTGGGGCCA CAGGACAGCT TCAATATTAT TGCTTTTTCC
AGTGATGCCA GGCCGTTGTG GCCGGACGCA AAACCGGCAA CGGCATTTAA TCTCGGGGCA
GCCCAGCAAT TTGTGCGCAG CCTTGAGGCC GATGGCGGCA CTGAGATGGC ATCTGCGTTG
GAGCTGGCCC TTAAAACGCC TTCAGTTGTA GATGAAGACA CCAAACGGTT GCGACAGGTG
CTTTTTATTA CCGATGGCGC CGTTAATGGC GAAGATGCGC TGTTTAATCT GATTGAGCGG
CGTCTGGGCA CATCGCGGCT TTTCCCCGTG GCTATCGGCG CCGCGCCAAA CGGGTATTTC
ATGAGCCGGG CGGCTGCAGC AGGTCGTGGC AGCTTTACCT TTATCGGTCA TGGCGGCGAA
GTGGCAGAAA AAATGAATCA GCTCTTGAGT CGCATTGAGC ACCCCGTGGT TAGCGATCTG
TCCGTGACCT GGGCTGACGG TAGCCCCGTT GATGCCATGC CTGGGGTATT GCCCGACTTG
TATGCGGGCG AGGCGCTTAA CCTGAGCCTC AGAACGGTCC CCGATGCGCT GATGCCCATC
ATAGTCAAAG GTAATACGGA CGGCCAAATC TGGGAGCGCA AGCTTACCCC ACGTGCCGTG
CCGGGCGGCA GCGGCCTTGA CCTGCAATAT GGCAAAGCCC GGGTTGATGA CCTTGTCCGA
CAAACATTAA CACCTTCCCA GCGGCGTGCA GCCACTGTGG CGTTGGGACT GGAATATCAC
CTTGTCACAG CCCACACCAG CCTGGTTGCC GTGGATAAAA CCCGGGTCTC ACACGGCCAG
GGACTGGATG CCAGGTTGCC GGAGGCAACG CCCCATGGCT GGCAAGGCGG CAGATTGCCC
CAAACCGCGT CGGGTAGCCT GGGATTGATG TTGGCCGGCG CTTTGCTGGT GCTGTTTGCT
ATCGCAGCGG CAACGTGGAG GCGGGAAGAT GAAGCGGCTT AG
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| Protein sequence | MKDDKSMYSQ RKVVPKVEMK QGLTALAMMA LLAAPTVSAS SASTVQPVTL PLDGPMAGQG
STSPGDIIAP GHGGELMFED EGTEQVSLAL DTRYTVKVSA LVSRVTVSQT FQNQSNRVIN
GHYRFALAPN AAVSGMRLTI GERLIEGEIQ EKAHAERVYE QAKRDGKRAS LVSHSESNLF
STRIANFMPG ETLTVSIDYQ EILHPQAGRV ELRIPTAQTP RYGASAMLPS AQNRMQDEPW
VSGVQGAAQN HLHAAAPFWP ATRAEAPADT PTPSLSLSAS IFGFAVAAVE SPSHGLCEQG
YRDGGWQLSL CPDTEADRDL VLSWVINEGS EPVADFLVQP GYSYPAAVES ANTQYGTAQD
KAKQDEYVRV DFSQGNYSHG LLTFMPPQPN LANRLARELV LVIDTSGSMA GDSMVQARSA
LIHALGGLGP QDSFNIIAFS SDARPLWPDA KPATAFNLGA AQQFVRSLEA DGGTEMASAL
ELALKTPSVV DEDTKRLRQV LFITDGAVNG EDALFNLIER RLGTSRLFPV AIGAAPNGYF
MSRAAAAGRG SFTFIGHGGE VAEKMNQLLS RIEHPVVSDL SVTWADGSPV DAMPGVLPDL
YAGEALNLSL RTVPDALMPI IVKGNTDGQI WERKLTPRAV PGGSGLDLQY GKARVDDLVR
QTLTPSQRRA ATVALGLEYH LVTAHTSLVA VDKTRVSHGQ GLDARLPEAT PHGWQGGRLP
QTASGSLGLM LAGALLVLFA IAAATWRRED EAA
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