| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1987 |
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| Symbol | |
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| ID | 4604237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 2414311 |
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| End bp | 2414958 |
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| Gene Length | 648 bp |
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| Protein Length | 215 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639781364 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_927862 |
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| Protein GI | 119775122 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0143235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0109237 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGAT TCGACCTGAT TATCTTCGAT TGGGATGGCA CCCTGATGGA TTCCATCAGC
AAGATAGTCG ATTGCATGCA GGCACTGGCT CAGGAACTTT CCATTGCCGT GCCAACCGAA
AAGGCTGTCC GGGACGTGAT TGGCCTTTCA ATGCCTGAAG CCATGCGCGC CCTGTTTCCC
GCTGAAACTG AGGCAACAAG GGCAGGCTGG ATAAACAGGT ATAAGGCCCA TTACCAGATT
TTTAATGCCA CCCCGAGCCC GTTATTTGAG GGGGTGCCTG AGCTGTTGAC ATCATTGCAC
GGGGCATCGC GCAAACTGGC TATTGCCACA GGTAAGGGCA GGGAAGGGTT AAACCGTATT
CTGGATGAGA CCCGTCTTGG GGACTGTTTC CACGCTTCCC GCTGCGCCGA TGAAACCCAA
AGCAAACCCC ACCCGCAGAT GTTGCATGAA TTACTGGCAG AACTTGATGT CAGTCCCGAA
CGTGCGGTGA TGATTGGTGA TTCGGCATTT GATTTACAGA TGGCAAACAA CGCGGGTGTT
GCAGCCATCG GGGTGGATTA CGGTACGCAC GACAGAGAGA CACTGCTGGG TGTTTCGCCC
CTTGCAGTAG TGTCTCATCC TCTGGAGATA TTGCACCACT TGCGCTGA
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| Protein sequence | MQRFDLIIFD WDGTLMDSIS KIVDCMQALA QELSIAVPTE KAVRDVIGLS MPEAMRALFP
AETEATRAGW INRYKAHYQI FNATPSPLFE GVPELLTSLH GASRKLAIAT GKGREGLNRI
LDETRLGDCF HASRCADETQ SKPHPQMLHE LLAELDVSPE RAVMIGDSAF DLQMANNAGV
AAIGVDYGTH DRETLLGVSP LAVVSHPLEI LHHLR
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