| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1877 |
|---|
| Symbol | |
|---|
| ID | 4604127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2293225 |
|---|
| End bp | 2293503 |
|---|
| Gene Length | 279 bp |
|---|
| Protein Length | 92 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639781253 |
|---|
| Product | transposase, putative |
|---|
| Protein accession | YP_927752 |
|---|
| Protein GI | 119775012 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2963] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.350595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATA AACGTTACCC CGAACAATTC AAAATCGAAG CAGTTAAACA AGTCACTGTT
GCCGGCCATT CTGTTGCTGA CGTTGCTCAG CGTTTAGGTA CTACCACCCA CAGTCTTTAT
GCCTGGATTA AGCGCTATGG CCCTGATTCT GAGGAACACC TTCAGCAGTC TGCTGAGTCC
GCCGAAATTC GACGACTACA AAAAGAGCTT AAGCGCGTTA CTGAAGAACG TGACCTGTTA
AAAAAAGCCG CGGCGTACTT CGCAAGCCAC CCCGAGTAA
|
|---|
| Protein sequence | MSHKRYPEQF KIEAVKQVTV AGHSVADVAQ RLGTTTHSLY AWIKRYGPDS EEHLQQSAES
AEIRRLQKEL KRVTEERDLL KKAAAYFASH PE
|
|---|
| |