| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1863 |
|---|
| Symbol | |
|---|
| ID | 4604113 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2268654 |
|---|
| End bp | 2271746 |
|---|
| Gene Length | 3093 bp |
|---|
| Protein Length | 1030 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639781239 |
|---|
| Product | DNA-directed DNA polymerase |
|---|
| Protein accession | YP_927738 |
|---|
| Protein GI | 119774998 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0330088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGCCG AGCTACATGC CATCAGCAAC TACAGCTTTT TACGGGGCGC GTCGCACCCC
CACGAGCTGG TGGCCGAGGC GGCGCGGCTT GGCTACAGTG CCATCGCCAT TACCGATGAG
TGTTCGGTGG CCGGTGTGGT CAAGGCGCAC ATGGCCGCCG TGGATGCTGG GATATCACTG
ATTGTGGGCA GTGAATTTCG GCTGCAGCAA GGCACCTTTG TGCTGCTGGC CACCAGCCGG
GCAGGTTATG GCGCCCTGTG CCGCTTGATA AGTCGTGGCA GGCGGCGGGC GCCCAAGGGG
GAATATCGCA TCAATCTGGA CGACCTGTTA TCGCCGCTGC CCGATTGTGT GCTGCTGTGG
CGCCCGCCGA TGCCCCAAAA TCCGGGGACT GACATAGCCG CTACCGAGCA GCATTGGTTT
GCTACGCAAA AGCAGCTGGC AAAGCAGCTT ACGCCCTGGC AGGGGCGGCG CTATTTACTG
GCAGAGCAGT GTCTTGAGGC CGCAGGCAGC CTGTGGCAGC GCTATTTGAT GCGTCTATCC
GGCTTGTGCG ACATCCCCTG CGTGGCAGCA GGAGATGTGC GTATGCACAG CGCAGCGCGT
CAGCCGCTTT TGGATGTACT CACCTGCATT CGCTTAGGGC TCAGGCTTGA TGAAGCCGAA
GGGCATTTGT GCCAGAACGC TGAGCATTAC CTGCGGCCCC TTGGCAGTAT CCATCGCCGT
TATCCGCAGG AGTGGATTGC CAACACCCAG AAGATTGCCA GTCAGTGCCG GTTTTCGATG
GCTGAGCTGA GGTACGAGTA CCCGGCGGAG CTGGTGCCTG CCGGGTTTAG CGCCAGTGAA
TACCTTGCCC GGGAGGTGGC CAAAGGCGCC CGGCGCCGAT ACGGCCTGGC GGTGCCAGCA
GCGGTAAAAC GCCAGTACCT GGCCGAGCTT AAGCTTATCC ATGAGCTTGA ATACGAGTAT
TTTTTTCTCA CCATTTACGA CATAGTCCGC TTCGCCAGAC GCAAGCGGAT TTTGCATCAG
GGCCGCGGCT CGGCGGCCAA TTCGGTGGTG TGTTTTTGCC TTGGGATCAC CGAAGTGGAT
CCGACCCGGG TCAATATGCT GTTTGAACGC TTTATTTCCA AAGAACGCCA CGAGCCGCCG
GATATCGATG TGGACTTTGA GCATGAGCGC CGCGAAGAAG TGATCCAGTA CATTTACCGT
AAGTACGGCC GCCACCGGGC GGCGCTGGCT GCGAGTGTGA TCACCTATCG ACTCAAAAGC
GCCATGGGCG AGGTGGGCAA GGTGCTGGGG CTGGACAGAG AGCTGGTGGC GAGGCTCATT
CAGGGCATCG ACAGGCGCGA TCCTAGCCAT CCCTGGCGCG AACAATTGGC CGCGCAGCTG
CCTAGCGCCG ACATGTTTGG CTACCTTGTG CAGTCCTTGC TCGGGTTTCC GCGTCATTTA
TCCCAGCATG TAGGCGGCTT TGTAATTTCC GCCGGGCCGC TGGCCGAGCT GGTGCCGGTG
GAAAACGCCG CCATGGAAGA CAGAACCGTT ATTCAGTGGG ATAAGGACGA TCTGGAGGCG
CTGGGACTAC TGAAAGTGGA CGTGCTGGCG CTGGGGATGC TGACTGCCAT CCGTAAGTGC
TTCGAGCTTA TCAGTCGTCA TCAGCAGCCC TTTGGCATGC GGTCAATCAA AGCCGAAGAT
CCCAATGTTT ATCGCATGCT CAGTCGCGGC GACAGCATGG GGGTGTTTCA GGTGGAGTCC
CGGGCTCAAA CGTCCATGCT GCCAAGGCTC AGACCTGCCT GCTATTACGA TCTGGTTATT
CAAATTGCGA TTGTGCGCCC GGGGCCAATT CAGGGGGACA TGGTGCATCC GTTCCTTCGA
CGCCGCAAAG GGTTGGAGGC GGTGACTTAC CCCAGCGAGG CAGTTAAAGC CGTGCTTGAG
CGCACCATGG GGGTGCCGAT TTTTCAGGAG CAGGTGATCA AGCTTGCCAT GGTGGCCGCA
GGTTTCAGTG GCGGTGAGGC GGATGCGCTG CGCCGGGCCA TGGCCAGTTG GAAACATACC
GGCAAGCTGT GGTCCTTCGA GCAAAAGTTG CTGGATGGCA TGGCCGCACG GGGTTACAGC
GAAGACTTTG CCCGGCAGAT TTTTCGCCAA ATTCAGGGCT TTGGCGAGTA TGGTTTTCCT
GAATCCCACT CGGCAAGCTT TGCGCTGTTA GCCTATGTCT CTGCTTATCT TAAGTTATAC
CACCCGGCGG CCTTTTGCTG CGCGCTGCTC AACAGCCAGC CGATGGGGTT TTACAGCCCA
TCGCAGCTGT TACAGGACGT GCGCCGTCAT GGGGTGGAGG TGTTTGATGT GTGTATCAAT
CACAGCCAGT GGGACAGCAG CCTGGTGAAG ACCGCCACTG GCTTTGCTAT TCGACTGGGA
TTCAGGCAGG TCAAAGGCTT GAAAGAGCAG GCTATGCAAA GGTTGGTGGA CGTTCGTTCT
GCTGCTGGTT TTGCGCACTT GAGTGAAATC AGCATGCTGC TCGACAGGCA TGCTTTGGAG
CTGCTTGCCG CTGCCGATGC CTTCAGACTG CTCAGTGGCC ACCGATTTCA AAGTCGCTGG
CAACTCTCTG CCCGTCAGGC AAGCCTGCCG CTGTTTGATG ACTTGCCAGA GCCGCTTAAG
CCAGTGGGAA CTGAGCCAAG TCTGGATGCC CCCAATGCGG TCCAGTGCCT CAAGGCGGAT
TATCGCAGCA AGGGGTTAAG TCTCGGGCAA CATCCGATGG CATTGTTGCG AATTGCCGGC
TTGCTTGGAA AATCTTTGAC AGCAAAAGCG CTTGAAAATA CCCGCCATGG CCAGTTGGTG
ACTGTTGCCG GTGTGGTAAC TGGCAGGCAG CGACCCGGCA CTGCATCGGG TGTAACCTTT
ATTACCCTGG AAGATGAAAC AGGCAATACC AATCTGATAG TGTGGATGGG TACAGCAAGG
GCGCAGCGAA AACCGTATTT AACATCAACT ATTTTGAAGG TAAGTGGCAC TGTGGAACAT
GCCGATGGCG TAACCCATGT GGTGGCGGGT CGCCTTGAGG ATATCTCGCA TTTGCTCGAT
AGCCTCAAAG TGGCCTCGCG GGATTTTCAC TAG
|
|---|
| Protein sequence | MYAELHAISN YSFLRGASHP HELVAEAARL GYSAIAITDE CSVAGVVKAH MAAVDAGISL
IVGSEFRLQQ GTFVLLATSR AGYGALCRLI SRGRRRAPKG EYRINLDDLL SPLPDCVLLW
RPPMPQNPGT DIAATEQHWF ATQKQLAKQL TPWQGRRYLL AEQCLEAAGS LWQRYLMRLS
GLCDIPCVAA GDVRMHSAAR QPLLDVLTCI RLGLRLDEAE GHLCQNAEHY LRPLGSIHRR
YPQEWIANTQ KIASQCRFSM AELRYEYPAE LVPAGFSASE YLAREVAKGA RRRYGLAVPA
AVKRQYLAEL KLIHELEYEY FFLTIYDIVR FARRKRILHQ GRGSAANSVV CFCLGITEVD
PTRVNMLFER FISKERHEPP DIDVDFEHER REEVIQYIYR KYGRHRAALA ASVITYRLKS
AMGEVGKVLG LDRELVARLI QGIDRRDPSH PWREQLAAQL PSADMFGYLV QSLLGFPRHL
SQHVGGFVIS AGPLAELVPV ENAAMEDRTV IQWDKDDLEA LGLLKVDVLA LGMLTAIRKC
FELISRHQQP FGMRSIKAED PNVYRMLSRG DSMGVFQVES RAQTSMLPRL RPACYYDLVI
QIAIVRPGPI QGDMVHPFLR RRKGLEAVTY PSEAVKAVLE RTMGVPIFQE QVIKLAMVAA
GFSGGEADAL RRAMASWKHT GKLWSFEQKL LDGMAARGYS EDFARQIFRQ IQGFGEYGFP
ESHSASFALL AYVSAYLKLY HPAAFCCALL NSQPMGFYSP SQLLQDVRRH GVEVFDVCIN
HSQWDSSLVK TATGFAIRLG FRQVKGLKEQ AMQRLVDVRS AAGFAHLSEI SMLLDRHALE
LLAAADAFRL LSGHRFQSRW QLSARQASLP LFDDLPEPLK PVGTEPSLDA PNAVQCLKAD
YRSKGLSLGQ HPMALLRIAG LLGKSLTAKA LENTRHGQLV TVAGVVTGRQ RPGTASGVTF
ITLEDETGNT NLIVWMGTAR AQRKPYLTST ILKVSGTVEH ADGVTHVVAG RLEDISHLLD
SLKVASRDFH
|
|---|
| |