| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1774 |
|---|
| Symbol | |
|---|
| ID | 4604024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2169443 |
|---|
| End bp | 2170771 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639781140 |
|---|
| Product | recombination factor protein RarA |
|---|
| Protein accession | YP_927649 |
|---|
| Protein GI | 119774909 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2256] ATPase related to the helicase subunit of the Holliday junction resolvase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000171512 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00888717 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCGTTGA GTTTTGATTT CAGCCCCGAC TTCAACCCAC TGGCTGCCCG TATGCGTCCG
GCCAGTGTTG AGGAGTATAT AGGTCAGTCA CACCTCCTCG GAGAGGGTAA GCCACTGCGG
CAGGCATTGC TTGCCGGTAA GGTGCACTCG ATGCTGCTTT GGGGGCCACC AGGCACTGGC
AAAACCACGC TTGCCGAACT CGTCGCACGC TACGCCAATG CCCATGTTGA GCGTATCTCT
GCTGTCACGT CCGGGGTCAA GGAAATCAGG GCCGCTATTG AACAGGCGAA AAACGTGGCT
CAGTCCCGTG GACAGCGAAC CTTGCTGTTT GTGGACGAGG TCCATCGTTT TAATAAGAGT
CAACAGGATG CCTTTCTGCC GTTTATCGAA GACGGTACAG TGATTTTTAT CGGCGCCACT
ACCGAAAACC CGTCCTTTGA AGTCAATAAT GCGCTGCTGT CGCGCTGCCG CGTGTATCTC
ATCAAACGGC TTGAGGATGA TGCGATTGGG CAGATCCTGG CACAGGCCAA CAGCGATGAG
GCGAGGGGAC TTGGCAAACG CGGTCTGTTG CTAAAGGCAG AACTCAAATC TGCCATCGCC
AGGCTTTGCG ACGGCGATGC CCGCAAGGCC CTCAATTTAC TTGAACTCAT GTCTGACTTA
CTGCCAGATG GCGGTGAGTA CAATCTTGAA CTTTTATCCG AGGTCGCCGG GCATCAGGCT
GCAGGTTATG ACAAAAATGG CGACCAGTAT TACGACCTCA TCAGTGCAGT GCATAAGTCC
ATTCGTGGCT CGGCGCCGGA TGCCGCCCTC TACTGGTTTT GCCGCATTCT TGAAGGCGGC
GGCGATCCCT TGTATGTGGC AAGGCGTCTT CTTGCCATTG CCTCGGAAGA CATTGGCAAT
GCCGACCCCA ATGCCATGAC AGTCGCTCTG AATGCCTGGG ACTGTTTTCA CCGCGTCGGA
CCAGCCGAGG GGGAACGCGC TATCGCTCAG GCGGTGATTT ACCTTGCCAG CGCGCCAAAA
AGTAACGCCG TCTACACCGC CTTTAAGGCC GCCCGGGTCC TTGCCAGAGA AACAGGCAAC
GCGCCTGTGC CCAATCATTT GCGTAACGCC CCCACCAAGC TCATGAGTGA ACTTGGCGTC
GGCGAAGGTT ATCGTTATGC CCACGATGAG GATGGGGCCT TTGCCGCGGG GGAAAATTAT
TTTCCCGAAG TCCTGCAGCA CAGCCGAATT TACCAGCCCA CCGCGCGGGG TTTTGAAAAG
CGCATTCGAG ATAAACTTGC TCATCTCGAC GCACTGAATC AACAAAGTGG GCGAAAACGC
TATGAATAA
|
|---|
| Protein sequence | MSLSFDFSPD FNPLAARMRP ASVEEYIGQS HLLGEGKPLR QALLAGKVHS MLLWGPPGTG
KTTLAELVAR YANAHVERIS AVTSGVKEIR AAIEQAKNVA QSRGQRTLLF VDEVHRFNKS
QQDAFLPFIE DGTVIFIGAT TENPSFEVNN ALLSRCRVYL IKRLEDDAIG QILAQANSDE
ARGLGKRGLL LKAELKSAIA RLCDGDARKA LNLLELMSDL LPDGGEYNLE LLSEVAGHQA
AGYDKNGDQY YDLISAVHKS IRGSAPDAAL YWFCRILEGG GDPLYVARRL LAIASEDIGN
ADPNAMTVAL NAWDCFHRVG PAEGERAIAQ AVIYLASAPK SNAVYTAFKA ARVLARETGN
APVPNHLRNA PTKLMSELGV GEGYRYAHDE DGAFAAGENY FPEVLQHSRI YQPTARGFEK
RIRDKLAHLD ALNQQSGRKR YE
|
|---|
| |