| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1762 |
|---|
| Symbol | |
|---|
| ID | 4604012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2157797 |
|---|
| End bp | 2158405 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639781128 |
|---|
| Product | riboflavin synthase subunit alpha |
|---|
| Protein accession | YP_927637 |
|---|
| Protein GI | 119774897 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0307] Riboflavin synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.117708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0239338 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACTG GTATCGTGCA AGCCACCTGC GAGTTGGTGG CACTGGAAAA GCGCCGGGGA
ATGCACACCC TGGCGGTGAG TCTGCCAGCT GAATTAAGAG AAGGGCTCAC CCTGGGGGCA
AGTGTCGCGA ACAATGGCGT TTGTTTGACA GTTACCCGAG TCGAGGATGA TAGGGTCTTT
TTTGACGTAA TGGAAGAAAC CCTTACATTA ACCAACCTGG GTACGATAGC GCCGGGTGAC
CAAATTAATA TTGAACGCTC TTTAACCTTT GGTAAGGAAA TCGGTGGTCA TCTGCTTTCC
GGCCATGTGC ATTGTCAGGC GGTAGTGGAG CGAGTGACCG ACGTGGGGGA GCAGAGAGAT
TTGCACTTAC GTCTGCCGAA TGAATGGATG AAATACGTTC TTTACAAGGG GTTTGTCGCC
GTCAATGGAT GCAGTCTGAC GGTGGGAGAG GTGTTTGATG ATGGCTTTAT GCTGCACCTC
ATTCCGGAAA CGCTGAGGCT AACAAATCTC AAAGACGCAG TCGCCGGCAC TCAACTGAAT
ATTGAAATCG ACAGTCAGAC ACAAACCATT GTGGAGACCG TCGAGCGGGT ACTGGCAGCT
CGTCAGTAA
|
|---|
| Protein sequence | MFTGIVQATC ELVALEKRRG MHTLAVSLPA ELREGLTLGA SVANNGVCLT VTRVEDDRVF
FDVMEETLTL TNLGTIAPGD QINIERSLTF GKEIGGHLLS GHVHCQAVVE RVTDVGEQRD
LHLRLPNEWM KYVLYKGFVA VNGCSLTVGE VFDDGFMLHL IPETLRLTNL KDAVAGTQLN
IEIDSQTQTI VETVERVLAA RQ
|
|---|
| |