| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1593 |
|---|
| Symbol | |
|---|
| ID | 4603845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1945662 |
|---|
| End bp | 1946681 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639780949 |
|---|
| Product | dihydroorotate dehydrogenase 2 |
|---|
| Protein accession | YP_927470 |
|---|
| Protein GI | 119774730 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01036] dihydroorotate dehydrogenase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000395197 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTACA AAATCGCGCA GTCTATCATG TTCCAAATGG ATCCTGAGCG AGCCCACAAC
CTGGCCATTG GCAGCCTCAA GCGAACCGCT AACACACCTA TGACGGCGTT TTATGCTCAG
TGCATTGCAC CTAAACCTGT GACTTGCATG GGGATCATCT TTCCAAACCC TGTTGGGCTT
GCCGCAGGTC TGGATAAAGA CGGTGAGGCC ATTGATGCCT TCCACGCCAT GGGTTTTGGA
CATGTGGAAG TAGGGACAGT GACACCGCGT CCACAGCCTG GCAACGATCT GCCGCGTTTG
TTCCGGTTAA AGCCGGCCAA GGGCATCATC AACCGCATGG GTTTTAACAA TAAGGGCGTG
GATAATCTGG TCGCGAACCT TAAGGCAAAG AAAACCGATA TTCTGGTCGG TGTGAATATT
GGTAAAAACA AAGATACACC GGTGGAAGAG GGTAAAAACG ATTACCTCAT CTGTATGGAT
AAGGTGTATC CCCATGCGGC CTATATTGCC GTGAATATTT CATCTCCCAA CACGCCGGGT
TTACGCACCC TGCAGTATGG CGATCTATTG GATGATCTCC TGTCGTCGCT TAAAGCCAAG
CAAACTGAGC TGGCTGAGCA GCATGGCAAA TATGTGCCCA TTGCACTTAA AATTGCACCG
GATCTGACCG ATGAAGAAAT TGCCAGTATT GCGACATCCT TAATCAAAAA CCAATTTGAT
GCGGCAATTG CCACCAATAC GACCTTGAGC CGTGATGGTG TTTCAGGATT GGCCAATGCA
AATGAAACTG GTGGTCTATC AGGTAAGCCA TTAACTGAAT TATCGACCAA GGTGATCAAA
AAATTGGCCG CCGAATTAAA AGGTGAGATC CCAATTATTG GTGTGGGTGG GATCAATTCA
TCTCAGGATG CACTGGCTAA ATTTGATGCA GGTGCCACGC TTGTTCAAAT ATATTCAGGC
TTTATCTATC AGGGTCCGAA ATTAATAAAA GACATAGTGG CTTCTTATAG CGCAAAATAA
|
|---|
| Protein sequence | MFYKIAQSIM FQMDPERAHN LAIGSLKRTA NTPMTAFYAQ CIAPKPVTCM GIIFPNPVGL
AAGLDKDGEA IDAFHAMGFG HVEVGTVTPR PQPGNDLPRL FRLKPAKGII NRMGFNNKGV
DNLVANLKAK KTDILVGVNI GKNKDTPVEE GKNDYLICMD KVYPHAAYIA VNISSPNTPG
LRTLQYGDLL DDLLSSLKAK QTELAEQHGK YVPIALKIAP DLTDEEIASI ATSLIKNQFD
AAIATNTTLS RDGVSGLANA NETGGLSGKP LTELSTKVIK KLAAELKGEI PIIGVGGINS
SQDALAKFDA GATLVQIYSG FIYQGPKLIK DIVASYSAK
|
|---|
| |