Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1576 |
Symbol | |
ID | 4603828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1919094 |
End bp | 1920017 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780932 |
Product | hypothetical protein |
Protein accession | YP_927453 |
Protein GI | 119774713 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2515] 1-aminocyclopropane-1-carboxylate deaminase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0153483 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCAGTC CCAGCCCAGT AGATCCCTTT TCCTTTTTTG GCCACAGTTT GTGGATTAAA CGGGACGATT TATTGCCTGA ACCCTTCAGT GGCAATAAGG GGCGTAAATT TGCCAGTTTG CTGGCTGACA GCTTTGATGG CGTGCAAACC CTGATTGGCT ATGGTTCGCC CCAGTCCAAT TCGCTTTATT CGCTGGCGGC GTTGGCGAGC AGGCGTGGCT GGCAACTGGA GTTCTATGTG GACCACATCG CCGCAAGCAT CTATCGGGGG GAAGAGGGCA ATTATGGCGG CGCGCTGGCA CTTGGCGCCA CGGTAATCAC AGTACCAGAG CCAAATATCT CGCCCCGTGA ATACATCGAG TCAATTCGCT TAAAGCAGAT GGACGCTGAC GCGTGTCTCT ATGTGCCGGA AGGTGGACGA TGCGCCCTCG CGCGCAGGGG TGTGCATACG CTTGGTCGCG AAATTGCGGA TTGGGCAGCC GCCCGTGGCG TGGCTCATCT GAACGTGTTT CTGCCGTCCG GCACAGGCAC CACGGCACTT TACCTCAGTG AGTATTTCCA TCAGCAGCAT TGTGATATCA GGGTGGTGAC TTGCCCTGTG GTGGGGGATG GCGATTATCT TTTTGACCAG TTTGCTGAAT TAAGTGCCGA CAGTCACATT TACCCCGAGG TGGTTGGAGA CGCCCATCAT TACGCCAAAC TCAAGCGTGA TGAGCTGGAG ATTTGGCTGG CTATGCGGCG CCAGGGGCTG GAATTTGAGT TGTTGTACGA TCCTTGCGGG CTGCTGGTAT TGAAGTCACT GCTGGATGCC AATGCAGAGG GAAACTGGCT GTACCTGCAT CAGGGTGGGC TTAGGGGGAA TGTGTCCATG TTGCCCCGCT ATCGGCGCAA GTTTGCACAG TTATTCGAAC GAGATGTCGC CTGA
|
Protein sequence | MPSPSPVDPF SFFGHSLWIK RDDLLPEPFS GNKGRKFASL LADSFDGVQT LIGYGSPQSN SLYSLAALAS RRGWQLEFYV DHIAASIYRG EEGNYGGALA LGATVITVPE PNISPREYIE SIRLKQMDAD ACLYVPEGGR CALARRGVHT LGREIADWAA ARGVAHLNVF LPSGTGTTAL YLSEYFHQQH CDIRVVTCPV VGDGDYLFDQ FAELSADSHI YPEVVGDAHH YAKLKRDELE IWLAMRRQGL EFELLYDPCG LLVLKSLLDA NAEGNWLYLH QGGLRGNVSM LPRYRRKFAQ LFERDVA
|
| |