| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1517 |
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| Symbol | |
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| ID | 4603769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1846415 |
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| End bp | 1847356 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780867 |
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| Product | collagenase |
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| Protein accession | YP_927394 |
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| Protein GI | 119774654 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000383276 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCCAC CCAAGTCCCT TATCACCGTC AGTTTGCTGC TGGCACTCAT CAGTGCGGTT
TCCCACGCCA AGGGTCGCCC CGGTACCAAC CCCACCGAGC CTGCCGATCC CGATGTGGTA
TTGCCTATCC GTGTGGATTG CAGCGCCACT ATCAATTTGT GGGCGCAGGA CATGACAGAC
CCGCAAATTG CCGATACCTG TGCGCAGCTC TCAAGCCAGG AAAGTGATTT TCACCAAAGA
ATGCAAACCT TTGGTGAGCC TGTGGCAAAC GACTACAACG ACAGCCTGCG GGTGGTGGTG
TTTGATGATT ACTCCCAATA TGACAAATAC GGCTATGAGC TTTTCAATAT CAGCACCAAC
AACGGCGGCA TTTACATTGA AGGCAATCCG GCGGATGTAA ACAACCAGGC GAGTTTCTAC
GCCCACGAAG CCGACTGGCT ACTTCCCGAG TTTGAAATTT GGAATCTGCG CCACGAGTAT
ATCCATTACC TGGAAGGGCG CTTTGTCAGC TATGGCGGCT TTAATTTCTA CCCGAGTAAG
ATGGTGTGGT GGGCTGAGGG CCTTGCGGAG TACCTTTCCC TTGGCAGCGA CAATGCCACA
GCGGTGAATC TGGCACTTAA CACCCGCGCC AATCGTCGCC CGACCCTGGC GGCAATTTTT
TCAACCAGTT ACCGGGATGG CACCGACAGG GTTTACCGCT GGAGTTATCT GGCAATTCGC
TTCCTGTTTG AGCGCCACGA AGCCGAAGTG CTGGCCATGA CTGAGCATCT GAAACATAAC
CAGTTTGCCA GCTATGAAGC GGCGCTTGGC CAGTTTGCGA CAAACTATCA GGCCGAGTTT
GCCGAGTGGA TGAATGGCCT GGCGCCGCAA AAGGCAAAGG CGCAGGACAG TAAGCGTGAA
CAGATGCTGC TGCGTCATGC TGAGCACAAA GGGCGCCAGT AA
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| Protein sequence | MYPPKSLITV SLLLALISAV SHAKGRPGTN PTEPADPDVV LPIRVDCSAT INLWAQDMTD
PQIADTCAQL SSQESDFHQR MQTFGEPVAN DYNDSLRVVV FDDYSQYDKY GYELFNISTN
NGGIYIEGNP ADVNNQASFY AHEADWLLPE FEIWNLRHEY IHYLEGRFVS YGGFNFYPSK
MVWWAEGLAE YLSLGSDNAT AVNLALNTRA NRRPTLAAIF STSYRDGTDR VYRWSYLAIR
FLFERHEAEV LAMTEHLKHN QFASYEAALG QFATNYQAEF AEWMNGLAPQ KAKAQDSKRE
QMLLRHAEHK GRQ
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