Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1472 |
Symbol | |
ID | 4603724 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1780940 |
End bp | 1782193 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780822 |
Product | ABC transporter permease protein |
Protein accession | YP_927349 |
Protein GI | 119774609 |
COG category | [V] Defense mechanisms |
COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.932359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAGG ATACTTTTAA TCAATATCGG GCGGGCGTGG TACAAGCATT GGGTGAGATG CTGCACCACA AGTTACGCAC GGCGCTGACA CTGCTGGGGA TGATTTTTGG GGTAGGAGCG GTGATTGCCA TGCTCAGCGT GGGCGAAGGT GCCGAACGCG AAGCTCTTAA GATGATTGAG TCCATGGGGA TTAAAAATCT GGTGGTCAAT GCGCGCCCAT CGGAAGGAGA AGCCTTGAAA ACTGTCCGCG AACACAGCAT TGGCCTTAGC CTGCGTGACA TCGAGAGTGC TATGGAAACC CTGCCTTTTA TCGAGGCTTA CAGCGCCGGT AAGCAGGTGA AGGTGTTTGG GCTTTTCAGT GTGCAGGGCC GCAGTGACGC GCTGGTGCAG GGCGTAACCC CCAGCTATTT TGATTTGAGC GCCTTGAAAC TTGCCGAAGG TCGACTTCTG GGCGACGAAG ATGAACAGCA CTTCAGGCAA TTGGCGGTAC TGGGGCCTGA AGCAGCCCGC AGCCTGTTCC CCCGGGGGGA TGCTGTTGGT CAGCGCATCA AAATCAACCA TCAGTGGTTT ACCGTGGTTG GCGTGCTTGA TGAAGGCGAA AAGGGCAAGT CGGCCATCGA AGGGGTTAAG GTGGGCGGCG AGCGTAATCA GGTGTTTATT CCGCTGGCCA CTGCGCTGAA AAAAATGCAG TTCAAGCCCC TCGAAGATGA ACTCGATACC ATCAAGTTTG CCCTGAAGGA GGGGATAGAC CCGTCTCTGG CGGCAAAAAG CGTGGAACAT CTGCTGTCAC GTCGTCATGG CAATGAGCAG GACTACGACA TAGTGGTACC GGCCGATCTG CTTGCTCAGC ACCAGCGGAC CCAGCAAATT TTCAATATAG TGATGGCCTG TGTGGCGGGA ATTTCGCTGC TGGTGGGGGG CATAGGGATC ATGAATATCA TGCTGGCCAC CATCTTGGAA CGTACTTCCG AGATAGGTTT GCTGCGGGCG CTTGGTGCCA CTCAAAAAGA CATCGCCAGA CAGTTTCTGA TAGAAAGCAT GGTGATTTCG GCCACCGGTG GCCTGATTGG TATTGGCGTG GGGTTATTGC TGGCGTTGGT TATTTCGGCG GCGGCCGGTT GGCCCGTGGC ATGGTCTGTG TTCGCCATTC TCCTGTCACT CTTGGTGTGT ATGGCTGTGG GGATAGGTTT CGGCCTGTAT CCAGCCAAAA AGGCCGCCAG GCTCGACCCT ATTGTGGCAC TTCAGCGTGA CTGA
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Protein sequence | MMQDTFNQYR AGVVQALGEM LHHKLRTALT LLGMIFGVGA VIAMLSVGEG AEREALKMIE SMGIKNLVVN ARPSEGEALK TVREHSIGLS LRDIESAMET LPFIEAYSAG KQVKVFGLFS VQGRSDALVQ GVTPSYFDLS ALKLAEGRLL GDEDEQHFRQ LAVLGPEAAR SLFPRGDAVG QRIKINHQWF TVVGVLDEGE KGKSAIEGVK VGGERNQVFI PLATALKKMQ FKPLEDELDT IKFALKEGID PSLAAKSVEH LLSRRHGNEQ DYDIVVPADL LAQHQRTQQI FNIVMACVAG ISLLVGGIGI MNIMLATILE RTSEIGLLRA LGATQKDIAR QFLIESMVIS ATGGLIGIGV GLLLALVISA AAGWPVAWSV FAILLSLLVC MAVGIGFGLY PAKKAARLDP IVALQRD
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