| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1334 |
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| Symbol | |
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| ID | 4603586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1625401 |
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| End bp | 1626663 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780684 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_927211 |
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| Protein GI | 119774471 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.414733 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.836705 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCCA GGGCAGGTGC TGCATTGTCG CTGTGGCTGG GTTTCAGGTT TTACCGTGCC
CGCCAGTCCA ACAGTTTTAT CAGCTTCATC TCCTTTGCCT CGACCGCAGG CATCGCTCTC
GGGGTGGCAG TCTTGATTAT TGTTCTGTCT GCCATGAACG GCTTTGAGCG TGAGCTCAGA
GAGCGTTTTT TGGACGTGGT GCCCCACGCC GAGCTGGTTG GCGTGAATGA ACCTGTACAC
AGTTGGCAGG CGATGGTTGC TGATGCATCA AAAATCCCGG GCATTCGTGG CGCAGCGCCT
TTTATCAGAT TGCAGGGATT GGCGCAGCGT CAGGGCGGTT TTCAGGGGCT GAGTCTGGTG
GGCATAGACA CATCCCTTGA AGGGCAGGTT TCGGGTATCG AGAGCTATAT GCCCACCGAT
GCCTGGCAGG CCCTTGGTCA GGATGAAAAT GCCATCGTAT TGGGGCGATC TCTGATGGAA
AAGCTTGGCC TGAACGAAGG CGATGCACTG GTGCTTTTTG TGCCGGATTT GAGTGGTCGC
CAAAATGGTA AGCTTGGTGC CACCCGCAGC CACAAATTTG TGGTGCGTGG CAGTTATCAT
TTGGGCGGCG AGCTTGAACT GGTCACTGCC TATGCCTCCA TGGCCCATTT GGCGCGGGTG
CTGGAAATGG GTGAGGATGT CAGCGGCGTG CGCATCGCCG TGGACGATGT GTTCAAGGCT
CCCAAGCTTA TCCGTGAGCT GGGCTTTACC CAGAGTCAAT ACCTGTACAT GAGTGACTGG
ACCCGCACCC AGGGGCACCT GTATCAGGAT ATTCAATTGG TGCGTACCCT GATGTATCTG
GTGCTGGCAT TGGTGATTGC CGTGGCCTGC TTCAATATCG TCTCTACTCT GGTGATGGCG
GTGAGAGACA AAACCTCGGA AATTGCCATC CTGATGACCA TGGGGCTCAG GCGCAGCGCC
ATAGTACTGG TCTTTATGGT GCATGGCGCC ATCAGTGGAC TCCTTGGCAC CCTGCTTGGC
GTCAGTGCCG GTGTACTGGT GGCGCTCAAT TTGTCCGGGC TCGCCAAGGC GGCCGAAAGT
GCCCTTGGTG TACAGCTGCT GTCATCCGAC GTTTACTTTA TCGATTTTCT GCCCTCTGAG
CTTCATGGAC AGGATGTTGC TGTGGTTGCT GCCATGGCAC TGCTGATGAG TCTGTTGGCG
ACCCTGTATC CTGCCTACAA GGCGAGCCTC ACTGAACCTG CGCCGGCTCT GGCAGGTCGC
TGA
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| Protein sequence | MSSRAGAALS LWLGFRFYRA RQSNSFISFI SFASTAGIAL GVAVLIIVLS AMNGFERELR
ERFLDVVPHA ELVGVNEPVH SWQAMVADAS KIPGIRGAAP FIRLQGLAQR QGGFQGLSLV
GIDTSLEGQV SGIESYMPTD AWQALGQDEN AIVLGRSLME KLGLNEGDAL VLFVPDLSGR
QNGKLGATRS HKFVVRGSYH LGGELELVTA YASMAHLARV LEMGEDVSGV RIAVDDVFKA
PKLIRELGFT QSQYLYMSDW TRTQGHLYQD IQLVRTLMYL VLALVIAVAC FNIVSTLVMA
VRDKTSEIAI LMTMGLRRSA IVLVFMVHGA ISGLLGTLLG VSAGVLVALN LSGLAKAAES
ALGVQLLSSD VYFIDFLPSE LHGQDVAVVA AMALLMSLLA TLYPAYKASL TEPAPALAGR
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