| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1330 |
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| Symbol | |
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| ID | 4603582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1619212 |
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| End bp | 1622679 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780680 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_927207 |
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| Protein GI | 119774467 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.643209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.63963 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAT TTACGGTAGA CCGTCTTCCC AAGACTCCGG CCAAAGGCCG GGTGTCTGCT
GTCAGGCTGC CTGGCGGCGT TGCCCGCGCC CTGACATTGG CCGAAATGAC CTGCAGTTAC
GCGGGTACCA CCCTGATAGT GACCAGTGAT ACCCCCACAG CCCTGGTGCT GGAGGCAGAG
CTTGGTTATT TGCTCAAGCC CCGTGGTATC GATATTTGCC TGTTTCCCGA CCGGGAAACC
CTGCCCTATG ACAGTTTTTC ACCCCACCAG GATCTGATTT CCCAGCGTCT CGAAACCCTG
TCCAATCTGG AGCGTGGCAA AGGGCGTTTG GTTATCGTGC CCCTCACAAC TCTGATGGTG
CGTTTGCCAC CCAAGGCATT CCTGGCCGCC AATGTGCTTA TTCTAAAAAA AGGCGACCGC
TATCAGCTGC AGCAGATGCG CCAGCATCTG GTGGACACGG GCTACCACCT GGTTGAGCAG
GTTTATGAGC ACGGTGAATT TGCCATCCGT GGATCGATTC TGGATATTTT CCCCAGCGGT
GCGAGCGAGC CACTGCGCAT AGAACTCTTT GACGATGAAG TGGAGTCGAT TCGCCATTTC
GACCCTGAGA CTCAGCGCTC CAGCGGCGAA GTCGACAGTA TTCGGATGTT GCCGGCAAGG
GAGTTCCCTA CCGACAGCCA GGCCATCGAA GGCTTTCGTC AGCGCTACCG CCGCACCTTT
GAGACAGTCA ACAACGCGGC GGAATCTGTG TACCAATTGG TCAGCCGCAA TCTGATGCCC
GCCGGTATTG AAAACTACCT GCCGCTGTTT TTTGATGACA CTGCCACCCT GTTCGATTAT
CTGCCCGAAG AGCTGCAAAT CATCACAACG GGTGCGCTGC ATCAGGCAGC AGAACATCAC
CTTGGCGAAA TCCACAGTCG CTACGAAGAC CGACAGGTTG ACCCACTGCG CCCCTTGCTG
CCGCCCAAGA CGCTGTACCA GACAACAGAA GAGCTGTTTG CCCGCTTTAA GCTGTATCCC
AGGATTGATT TGTCCGGCGA CGAAGGTGAT AAAACCCTTG AAGCAGCTCC CCTACCCGAT
ATACGAGCCA ACCATAAACT CAAGCAACCG CTTGAATCCC TGGCCAACTG GGCTCAGGGA
GGTCAGCGCA TCGCCTTTGT GGCCGAATCG GAAGGTCGCC GGGAAGCACT GCTGGAACTC
CTTGGCAAGG CAGGCTTAAA ACCCAAACTC TTTGGCCATC TGGATGAGTT TCTGGCCTCA
GACAGCCCTC ACGGTCTGGT AGTGGCGCCA CTCGCTATGG GCTGTCAGCT GAAAATGGGC
AAATCCCAGC TCGCCGTGGT GTGTGAAACC GAGCTTTTTG GTGAGCGGGT TTCTCAGGAG
CGACGCCGGG ACAAACAGCG CCAACTGAGT CAGGATGTGC TCATCAAAAA CCTGGCCGAA
CTCAAGGTGG GTCAGCCGGT GGTACACCTT GAGCACGGTG TGGGTCTGTA TCAGGGATTG
GAAACCCTCG ACACGGGTGG CCTGGTGGCC GAGTACCTCA AGCTCGAATA CGCCGGTGGA
GACAAGCTCT ATGTGCCTGT ATCGGCGCTG CATCTTATCA GCCGTTTTGC GGTGGGTAAC
GATGAGTCGG CGCCGCTCAA TCGCCTCGGT AACGAAAGCT GGAGCAAGGC CAAGCGCAAG
GCCATTGAAA AAATCCGTGA TGTGGCGGCA GAGCTTTTGG ACGTTTACGC CCGCCGCGAA
GCGCGCCCCG GCGATCCCTG TACCTTGGAT GAAGCCGAAT ACGCGCAGTT TGCCCAGGGT
TTCCCCTTTG AGGAAACCGT GGACCAGGAA ACCGCCATCA AGGCGGTTAT CGACGATATG
TGCCAGCCCA AAGCCATGGA CCGACTGGTG TGTGGTGATG TGGGCTTTGG TAAAACCGAA
GTTGCCATGC GCGCAGCCTT CCTTGCTGTG TCCAGCGGCA AGCAGGTTGT TGTACTGGTA
CCCACCACGC TGCTGGCACA GCAACATTTT GAAAACTTTA AAGACCGCTT CGCCGATTGG
CCAGTACGCA TTGAAGTGAT GTCACGCTTC AGGACCGCCA AAGAGCAACA GGCGGTGCTG
TCGGCCATGG GTGAGGGCAA GGTCGATATT GTGATTGGTA CGCACAAGCT TTTGAATACC
GAGCTTAATT TCGAGTCTCT TGGGCTGCTT ATCATCGACG AAGAGCACAG ATTTGGGGTA
CGTCAGAAAG AGCGTATCAA GGCCATGCGG GCCAATGTGG ATATTCTGAC CCTGACCGCC
ACCCCCATTC CCCGCACCCT GAACATGGCC ATGTCGGGTA TGCGGGATCT GTCCATAATC
GCCACCCCGC CGGCCAAGCG TCTGGCGGTG AAAACCTTTG TGCGTGAATA CGACAAGGCC
ACGGTGCGCG AGGCGATTCT GCGGGAAATT CTCCGCGGTG GTCAGGTGTA CTATCTGCAC
AATCAGGTTG AAACCATCGA GAAGGCCGCA CAGGACATTC GAGAACTGCT GCCGGAAGCG
CGGGTTGTGA CCGCCCACGG ACAAATGCGC GAGCGCGAGT TGGAGCGGGT CATGTCGGAC
TTTTACCATC AGCGCTTTAA CGTGTTGGTG TGTACCACCA TCATAGAAAC GGGTATCGAC
GTTCCCAGTG CCAACACCAT TTTGATAGAC AGGGCCGATC ATTTCGGTTT GGCACAACTG
CACCAGCTGA GGGGCCGCGT TGGGCGCTCC CATCACCAGG CATATGCCTA CTTGATGACT
CCCCATCCCA AGCTGATGAC GGTGGACGCC CGCAAACGGC TCGAGGCCAT CGATGCCCTG
GAAGATTTGG GGGCGGGCTT TATGCTCGCG ACTCAGGATC TGGAAATCCG CGGCGCCGGT
GAACTGCTTG GCGATGAGCA AAGCGGCCAT ATTTCCAAGA TTGGCTTCAG CCTTTACATG
GAAATGCTGG AAGGCGCCGT AAAGGCACTC AAGCAGGGCA AAGAGCCGTC ACTCCGGCAA
ATGCTGGGCG CTCAGTGTGA AATCGACTTA CGTATACCGG CGCTGCTGCC CGACGATTAC
GTAAACGATG TGAATATGCG ACTGTCACTC TATAAACGGA TAGCTGGCTG TGACACTGAA
AAGGCCGTGG ATGAAATGAA GGTCGAACTT ATCGACCGCT TCGGCCTCCT GCCCGATGCC
ACCCGTAACC TGTTAACCAT GACAGTACAG AAGCACAGGG CCACCCGACT GGGCGCCACT
AAAATCGAGA TGCACGGCCG TGGCGGCAGT ATTGAATTTG GTGAAGAGCA CAGGGTCGAT
CCCGGTTTTA TCATCGGCTT GCTTTCGTCA CAGCCCCAGG TCTATCGTAT GGACGGCCCC
AATAAACTCA GGTTCACCAT GCCTTGCGAA ACCGCCAAGG AAAGGTTGGA ACTCCTGGAA
CTGCTGCTGG AGCAGCTCGA ACAACACAGC GTTGGAGAAG GAAAATAA
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| Protein sequence | MSSFTVDRLP KTPAKGRVSA VRLPGGVARA LTLAEMTCSY AGTTLIVTSD TPTALVLEAE
LGYLLKPRGI DICLFPDRET LPYDSFSPHQ DLISQRLETL SNLERGKGRL VIVPLTTLMV
RLPPKAFLAA NVLILKKGDR YQLQQMRQHL VDTGYHLVEQ VYEHGEFAIR GSILDIFPSG
ASEPLRIELF DDEVESIRHF DPETQRSSGE VDSIRMLPAR EFPTDSQAIE GFRQRYRRTF
ETVNNAAESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPEELQIITT GALHQAAEHH
LGEIHSRYED RQVDPLRPLL PPKTLYQTTE ELFARFKLYP RIDLSGDEGD KTLEAAPLPD
IRANHKLKQP LESLANWAQG GQRIAFVAES EGRREALLEL LGKAGLKPKL FGHLDEFLAS
DSPHGLVVAP LAMGCQLKMG KSQLAVVCET ELFGERVSQE RRRDKQRQLS QDVLIKNLAE
LKVGQPVVHL EHGVGLYQGL ETLDTGGLVA EYLKLEYAGG DKLYVPVSAL HLISRFAVGN
DESAPLNRLG NESWSKAKRK AIEKIRDVAA ELLDVYARRE ARPGDPCTLD EAEYAQFAQG
FPFEETVDQE TAIKAVIDDM CQPKAMDRLV CGDVGFGKTE VAMRAAFLAV SSGKQVVVLV
PTTLLAQQHF ENFKDRFADW PVRIEVMSRF RTAKEQQAVL SAMGEGKVDI VIGTHKLLNT
ELNFESLGLL IIDEEHRFGV RQKERIKAMR ANVDILTLTA TPIPRTLNMA MSGMRDLSII
ATPPAKRLAV KTFVREYDKA TVREAILREI LRGGQVYYLH NQVETIEKAA QDIRELLPEA
RVVTAHGQMR ERELERVMSD FYHQRFNVLV CTTIIETGID VPSANTILID RADHFGLAQL
HQLRGRVGRS HHQAYAYLMT PHPKLMTVDA RKRLEAIDAL EDLGAGFMLA TQDLEIRGAG
ELLGDEQSGH ISKIGFSLYM EMLEGAVKAL KQGKEPSLRQ MLGAQCEIDL RIPALLPDDY
VNDVNMRLSL YKRIAGCDTE KAVDEMKVEL IDRFGLLPDA TRNLLTMTVQ KHRATRLGAT
KIEMHGRGGS IEFGEEHRVD PGFIIGLLSS QPQVYRMDGP NKLRFTMPCE TAKERLELLE
LLLEQLEQHS VGEGK
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