| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1242 |
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| Symbol | |
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| ID | 4603494 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1526273 |
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| End bp | 1527451 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780592 |
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| Product | methionine gamma-lyase |
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| Protein accession | YP_927119 |
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| Protein GI | 119774379 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
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| TIGRFAM ID | [TIGR01328] methionine gamma-lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000142707 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGGAGA AAAGCAAGTT AGCCACCCTC GTCGTTCATG GTGGCCACGA GCGTGATGCC
ATGGGGGCGC TGGTGAGTCC CCTCTATCAG AGTGCGACCT TTGTATTCGA CAACGCCCGT
CAGGGTGGTG CCCGTTTTGC CGGTGATGAG GCTGGCTATA TCTACACCCG ACTGGGTAAT
CCCACGACAG CTGAGCTTGA GCGCAAGCTG GCCATTCTAG AAGGGGCCGA GGAAGCAGCA
GCTACGGCGT CCGGTATGGG CGCTGTGTCA GCGGCGCTGC TTGCCAATCT GAGCCAGGGC
GATCATCTGG TGGCGAGCCG GGCCGTGTAT GGCTGTACCT TTGCCCTGAT GACTGATCTG
ATGGCCCGTT TTGGGATTGA AGTAACTCTG GTGGATTTTA AAGAGCCTGC CGCCATCGAA
GCCGCTATCC GTGACAATAC CCGGGCGATT TTCTGTGAAA CCCCGGTGAA TCCCCATCTG
GATGTATTCG ACCTCGATGC CATTGCTGCC ATCGGCAAGA GACACGGTTT GCTTACCATT
GTCGATAACA CCTTTATGAC TCCGCTGCTG CAGCGCCCGC TGGACCACGG CATTGATATG
GTCATTCACA GCGCCACCAA GTACCTCAAT GGTCATGGCG ATGTGATTGC CGGCATGGTG
GCAGGCAGCA AGGAACAGAT TGATAAAGTG AAATATCAAA TCATCAAGGA TATAGGCGCT
GTGATGTCGC CCCATGATGC CTGGTTGATA CTGAGGGGCA TGAAAACCCT AGATGTGCGT
GTGCAGCGCC ACTGTGATAA TGCGGAAAAA ATCGCGGATT TCCTTGAGGC TCACCCCAGG
GTAGGGCGAG TCTACTATCC GGCGCTTAAG AGCCATCAGG GACACAGGTT CCTGGGAACG
CAGATGCGCC GCGCCGGGGG CGTTATTGCC TTTGAACTTA AGTCGGATAT CGAAGGTTCC
ATCAATTTTG TCGACAGTCT CAAGGTGTTC ACCATCGCTG TAAGCCTGGG GGATGCCGAG
TCCCTTATTC AACACCCGGC ATCCATGACG CACTCACCAT ACACCCCCGA AGCGCGGCTT
GAGGCGGGGA TTACAGATAC CTTGCTGAGA ATTTCGGTAG GACTGGAAGA TGTGGATGAT
TTGATTGCGG ATTTATCTCA GGCTTTGGCA AAAATCTAA
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| Protein sequence | MQEKSKLATL VVHGGHERDA MGALVSPLYQ SATFVFDNAR QGGARFAGDE AGYIYTRLGN
PTTAELERKL AILEGAEEAA ATASGMGAVS AALLANLSQG DHLVASRAVY GCTFALMTDL
MARFGIEVTL VDFKEPAAIE AAIRDNTRAI FCETPVNPHL DVFDLDAIAA IGKRHGLLTI
VDNTFMTPLL QRPLDHGIDM VIHSATKYLN GHGDVIAGMV AGSKEQIDKV KYQIIKDIGA
VMSPHDAWLI LRGMKTLDVR VQRHCDNAEK IADFLEAHPR VGRVYYPALK SHQGHRFLGT
QMRRAGGVIA FELKSDIEGS INFVDSLKVF TIAVSLGDAE SLIQHPASMT HSPYTPEARL
EAGITDTLLR ISVGLEDVDD LIADLSQALA KI
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