| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1236 |
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| Symbol | |
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| ID | 4603488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1520960 |
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| End bp | 1522033 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780586 |
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| Product | psp operon transcriptional activator |
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| Protein accession | YP_927113 |
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| Protein GI | 119774373 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.787384 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.286341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCAACG CATTTAAACA GGATAACCTC ATAGGACAGT CCAATGCACT ACTGGAAGTG
CTTGAACATG TCTCACGAAT CGCCCCCCTC TCCAAGCCTG TGCTGATTAT TGGGGAACGA
GGTACCGGCA AGGAACTGAT CGCCGAGCGT CTGCACTATC TATCCCAGCG CTGGGATCAG
AGCTTTCTTA AACTAAATTG TTCATCTTTG AGCGAAAATC TACTCGAAAG TGAACTCTTT
GGCCATGAAT CCGGTGCCTT TACCGGCGCC AAGGGGCGTC ACGAAGGCCG CTTCGAGCGT
GCCGATGGCG GCACCCTGTT TTTGGATGAG CTGGCCAACA CCTCAGGGCT TATCCAGGAA
AAGCTGCTCA GAGTTATCGA ATATGGCGAG TATGAACGGG TCGGCGGCAG TAAAACGCTG
CAAGCCGATG TCCGACTGAT CTGCGCCGCC AACGAAGACT TACCCTCACT GGCTGAAGCG
GGCGAGTTTC GCGCCGACCT GCTCGACAGA CTCGCCTTTG ACGTCATCAC CCTTCCGCCC
CTGAGAAGCC GTAAAGAAGA TATCATGCCG CTGGCTGAAT ATTTCGGTGT TGGCATGGCG
CGGCAACTGA AACTCGAATA CTTTCCGGGG TTTGCCCCAC ACGCCATTGA GCAGCTGCTG
AGCCATCAGT GGCCCGGTAA CATCCGGGAG CTCAAGAACG TCATAGAACG CTCTGTGTAT
CGCAGCGGTG CCGATGGCGA GCCCATTGAA CACATAGTGC TTGACCCCTT CGATTCCCCA
TGGCGGCCAA AAGGCCGGAT TAAAACCCGT GAGCGCCAGG TTCAGCCAGC GCTGGCGCCG
GAGCCAAAGT CTGAGCCCAC ATTCGCAACA ACTGCTGCAG TCAGTGAATG TGCGCCAACA
CCAAGCTTTC CGCTGGATTT GAAAGAACAC CTGGAGGCCG TAGAAAAAGA CCTCATCCAA
CAGGCGCTGG CAGCAAGTCA GTTCAATCAA AAAAAATCGG CGGACATGTT GGGGCTCAGC
TATCACCAGC TGCGCGGGAT CCTGAAGAAA TACAATTTAC TGGATAAGGC ATAA
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| Protein sequence | MPNAFKQDNL IGQSNALLEV LEHVSRIAPL SKPVLIIGER GTGKELIAER LHYLSQRWDQ
SFLKLNCSSL SENLLESELF GHESGAFTGA KGRHEGRFER ADGGTLFLDE LANTSGLIQE
KLLRVIEYGE YERVGGSKTL QADVRLICAA NEDLPSLAEA GEFRADLLDR LAFDVITLPP
LRSRKEDIMP LAEYFGVGMA RQLKLEYFPG FAPHAIEQLL SHQWPGNIRE LKNVIERSVY
RSGADGEPIE HIVLDPFDSP WRPKGRIKTR ERQVQPALAP EPKSEPTFAT TAAVSECAPT
PSFPLDLKEH LEAVEKDLIQ QALAASQFNQ KKSADMLGLS YHQLRGILKK YNLLDKA
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