| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1145 |
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| Symbol | |
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| ID | 4603397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1394170 |
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| End bp | 1395357 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780492 |
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| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| Protein accession | YP_927022 |
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| Protein GI | 119774282 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.541417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.143441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAATC TGGTGATCCT TGGGGCCACA GGCTCTATCG GTAAAAGTAC TCTGGATGTC
ATCAAACGTA ACCCCGAGCG TTATCGGGCG TTTGCCTTGG TGGCGGCAAC CAGCGTGGAG
CGGATGCGGG ACCTTTGCAT TGAGCATCGC CCTCGTTACG CCCACATGGT GGATGAGTCA
GCGGCAAAAC GCCTGGCCGA TGCTTTGCCG ACCGGTCTTG GGATTGAGGT TTCCAGCGGT
GATGAAGCGC TGCTTGGGCT TGTGACGGCC GCCGAGGTAG ATACTGTCAT GGCTGCCATC
GTAGGCGCGG CGGGACTTCT GCCGACCCTC GCTGCGGTTC GTGCCGGTAA GCGGGTGTTG
CTTGCCAATA AAGAAGCGCT GGTCATGTCA GGTGAGCTCT TTATGGAGGA AACCAAAAAG
AGCGGCGCCC AGCTCTTGCC GGTGGACAGT GAACACAATG CGATATTCCA GTGCCTGCCA
GAGCAGGTAC AGCGAGAAAT CGGTCACTGT GATTTATCCG CAGCCGGTAT TTCCCACATC
TTACTGACCG GCTCCGGTGG CCCCTTTTTA ACATCTCCGC TGGACACCCT GGCCACCATG
ACGCCTGCCC AGGCCTGCAA ACATCCCAAT TGGTCCATGG GCCCGAAAAT CTCAGTAGAC
TCAGCCACCA TGATGAACAA GGGGCTGGAG TTCATAGAGG CTCGTTGGCT GTTCAACACC
GCCAGGGACG AACTCAAGGT CGTTATTCAT CCGCAAAGTG TCATTCACTC AATGGTCCAG
TACCGTGATG GCAGTGTGCT CGCACAAATG GGTAACCCGG ATATGCGCAC ACCCATAGCC
CATGCCATGG CGTATCCGCA GCGAATTTCA GCCGGTGTGG AACCTTTGGA CTTTTTCAAA
GTCGGACACT TAAGCTTTTG TGAGCCCGAT TACAGCCGTT TCCCTTGCCT GAAACTCGCC
ATGGATGCTT GCCATCAAGG ACAGGAGGCT ACCACAGTGC TCAATGCCGC CAACGAAGTG
GCTGTGGCTG CGTTTTTGGA CGGACGGATT GGATTTACCG ATATCGCTGT GATTAATGGC
GAATGTCTGG GTAAGATAGC CAAGACTCAT CTGGACTCAC TGGATGCCAT ACTCGCGCTG
GATTGGGAAG CGCGCCGACT GGCGAACCAA CTGATTAGCC GGGTTTAA
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| Protein sequence | MQNLVILGAT GSIGKSTLDV IKRNPERYRA FALVAATSVE RMRDLCIEHR PRYAHMVDES
AAKRLADALP TGLGIEVSSG DEALLGLVTA AEVDTVMAAI VGAAGLLPTL AAVRAGKRVL
LANKEALVMS GELFMEETKK SGAQLLPVDS EHNAIFQCLP EQVQREIGHC DLSAAGISHI
LLTGSGGPFL TSPLDTLATM TPAQACKHPN WSMGPKISVD SATMMNKGLE FIEARWLFNT
ARDELKVVIH PQSVIHSMVQ YRDGSVLAQM GNPDMRTPIA HAMAYPQRIS AGVEPLDFFK
VGHLSFCEPD YSRFPCLKLA MDACHQGQEA TTVLNAANEV AVAAFLDGRI GFTDIAVING
ECLGKIAKTH LDSLDAILAL DWEARRLANQ LISRV
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