Gene Sama_1090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1090 
Symbol 
ID4603342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand- 
Start bp1317002 
End bp1317673 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content55% 
IMG OID639780437 
Producthypothetical protein 
Protein accessionYP_926967 
Protein GI119774227 
COG category[S] Function unknown 
COG ID[COG5587] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02453] conserved hypothetical protein TIGR02453 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.403973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCACCC AAGCGACCTT CGACTTTCTT GCTGCCCTCG AAGCCAATAA CGAGCGCGAC 
TGGTTCAAGG CCAACCAGCA CACCTATGAA GACAAGGTGC GCACCCCGGC CCTTGCGTTA 
ATTGAAGCAG CCGCCCCCGC CATAGTCGCG TTATCTCCCA GGCTAACCGC GGTGGCCAAA 
AAAGTGGGAG GCAGCCTGAT GCGGCCCCAG CGGGACACCC GTTTTGGCCA TGATAAGCGC 
CCTTACAAGA CCAATGTCGG CATCCAGTTT CGCCATTTTC AGGGCAAGGA TGTGCATGCG 
CCCGGGCTGT ATCTGCATAT TGCCAATGAC GGCTGCTTTG TTGCAGCTGG CATCTGGCAC 
CCCGAATCCA AGGCGCTGAA TGCCATCAGA AGCTGTATCG ATGAAAATCC CGCCACCTAT 
CAAAAAGCGC TGAAGGCCCT GACTGACAGC GGCTTTGCCA TGGACGGCGA TAGCCTGTCG 
CGCCCACCGC GCGGCTATGA CAAGCGCCAC CCATTAATTG ATGAACTGAA ACGAAAAGAC 
TTTATCGCCG TAAAATCCCT GACAAATCAC GAAGTGCTGC AACCCGATTT TGCATCAAGG 
CTCGTCGCGG AGTTTGAGCA CTGCCAACAG CTGATGCGCT ATTTGTGTTT TGCACTGGAG 
CTGGATTACT GA
 
Protein sequence
MFTQATFDFL AALEANNERD WFKANQHTYE DKVRTPALAL IEAAAPAIVA LSPRLTAVAK 
KVGGSLMRPQ RDTRFGHDKR PYKTNVGIQF RHFQGKDVHA PGLYLHIAND GCFVAAGIWH 
PESKALNAIR SCIDENPATY QKALKALTDS GFAMDGDSLS RPPRGYDKRH PLIDELKRKD 
FIAVKSLTNH EVLQPDFASR LVAEFEHCQQ LMRYLCFALE LDY