| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0985 |
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| Symbol | |
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| ID | 4603237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1190309 |
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| End bp | 1193230 |
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| Gene Length | 2922 bp |
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| Protein Length | 973 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639780324 |
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| Product | sensor histidine kinase/response regulator TorS |
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| Protein accession | YP_926862 |
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| Protein GI | 119774122 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR02956] TMAO reductase sytem sensor TorS |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.374582 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCCTC CTTCATTGTC CTTCTCCAGT CTGTCCGGAC GTCTCATTCT GGCTTTTGTG
CTATTGGCCG CCTTGCTGCT GTTGCTGGTG AGTTTGGGGT CGGTGAGCCT GCAATGGGTA
AAACAGGCCG ACCATATGCT CTACGAGCGT TCGTTACCAG CATCCGATGC GGCAAGGGAG
CTGGTACAGT CTGCTGCTGC GCTCACCGAA AACACCCAGC TGCTTGCCAG GGTCAGCGAA
GAAAATCAGC GGGAGTTAAT TGGCCGCAAA CTTTCCATTG AGACCGCCAA TCTTCTGAGC
GCCGCCGAAA AGCTGAGAAG CCTTGGAGTA GATACCGCCG TGGACACCCC CAACACCCTG
GGGCGTGACT CGGGTGAAAT CGTGTCGGCC CTTGCGGAAC TTGGCAACAG GGTTGGGCGA
AAGCTTGAAC TGCACGATAC CCTGACCCAC CAGGCCAAGA CCCTCGCCCT TGCCAGTGCC
ACTGCCCGTG AGCTGGTACA GGCAGAGCTG GCGGTTGTGG ATGCCGTTCT TCTGGCGAAA
CTCAGTCAGG CGTATCCGCA GCAGGCCGGG CAGGGGCGCA GCGCCCGCTT ACTGGATGAC
ATCATAGAGA CTGAACTGGA TATTCAAAGC CAATTGCAGC GGGCGTTATC ACTCATCAAC
CGCATCGCGC TGGTGGCCGA GCTTGCCGAT GAGGGCACTG ACTCGGGCCT GCCCCTTGGG
GATATTCTGG GGGAGGGAGC GAGCGATGGG GCAGTAGAAA ACAGCCTCTG GCCACTTAAG
CGGGTAAGCC TGCTGGTGCG CGACCCAGTG CGCCAGGCCT CCCTTGAGGA AGAAACCCAG
CGTCTGCTTC ATGTGGGCGC TGTGCTGACG TTAAGAGCAG ACTTTCTTAA CGCCAGTCGT
TCGGTCAATT CATTGCAACA GCTGCTGCAG GATAAGCTGT TTGGTCTTAG CCAGCGCCTC
GACAGGGCGC TGCAAACTCA GAGTGCCAAG GCGCTGGAGG CCCGCAAAGA CTATCTGCGT
CAGCTCTCCT GGGCGGGCGC AGGGCTGTGG GGCACCGGCC TTGCGATGTT GCTGCTTATC
CTGCTGGTGT CTTACCGGGT GATTTACAAA GGTATTGCGG TGCGCCTCGG GGAAGCCACT
GGCGCTATGC ACAGTTTGGC CCGTGGCAAT ACCGATATCA GTCTGGACCC TCACGGCGAC
GATGAGCTTA CCGCCATGGC TGAAGCCATT GAGGCCTTTA AAGCCAAAAC CATTCGTAAT
CAGGAGCTGG CGGGCGAACT GCGGGAGAGC GCCCGTGAGC TTGCCAGCCA TAAGGCGGCG
CTGGAAGTCA AAGTAATAGA GCGCACGGCC GAGCTTGCCA GTGCCCGGGA AGCAGCGGAA
AACGCAAGTC AGGCCAAGAG CCGATTTCTT GCCACCATGA GCCACGAAAT TCGCACGCCG
CTCAATGGTC TGATGGGCAC ACTGGAGCTG CTCGATAAGG ATAAAAGCCT CACCGAGTCA
CAGCATCAGT TGCTGGGGCT GTCGCGCTAC AGTGCCGTGC TGCTGCAAAC CCTGTTATCG
GACATTCTCG ATTTCTCACG GCTGGAAAAA GGCCAGCTAA AGGCCCAACC GGCTCCGGTG
GATTTCCCCC AGCTGCTGGA TGAAGTGATG AATGTGATGC TGGCCGGTGC CAGCCTCGCT
GGGCTGGGGC TTGAGCTGCT GACAACCAAT GTGCCGCAAT ACGTGAGCCT CGATGGCCCC
AAACTCAGGC AGGTGCTGCT CAATTTGCTT GGCAATGCCA TCAAATTCAC CCAGCGTGGC
TCAGTGGTGT TAAGGGTTAG CGCCGAGGGG CAAAGGCTTC ACTTCAGTGT GACCGATACC
GGCGTTGGCA TGGATGAGGC GACTCGGCAA CGGCTCTTTA CCCCCTATGA AACAGGACAT
GTGCAGGGCA GGGCCCGGGG TACCGGGCTG GGACTTGCCA TCAGCCGTGA ACTGGTGTGC
CTGATGGCTG ATGTCGGCCC TGAGTCGGTC AACGAGGTTG GCATTCAAGT AGAGAGCCTG
CAAGGTGTTG GCAGTTGCTT CAGTTTCAGT TTGCCGCTGG TTCACTGCGA TGCCCCGGCA
GAGGCTGCAG CGCAGTCCTT CGTTGCCGTG TCGCCCAGGC GGGTACTGCT GGTGGAGGAC
AATCAGGTGA ATGCGCTGGT GGCCCGTGGA TATCTTGCCA CTCTTGGCCA CGAGGCCTCC
TGGGCATGGG ATTTGGCCGA GGCACGCAGA CTGCTTGCAG CAGAGCAATT CGATGCTCTG
ATGCTGGATA TGCAGCTACC GGATGGTGAT GGCCGCAGCC TGTTGCCATC GCTGCCTGCG
GGTATTCTGG TCGCGGCCTT TACCGCGCAG GTCGATATTG ATGCGGTGGC GGGTTATCAG
CGGGCAGGCG TAGAGACTGT GCTTGCCAAG CCCCTGAGTC TGGCGGCTCT GGGCCATTGG
CTGGGGGATG CATCCCAGAC TGATGTGTCT CAAACGGATG TATCCCGTGC TGATGCCTCA
TTGGCGGTCC CGGTGACGGA TGCCGCTGTG CACAATGCCC TTCGCACCGC CAACCCGGGA
CTGCTGGATA TTGAGCAGCT TGAGCTGGAC CTGGATATTC TTGGTCGTGA CACGCTGGAG
GAAATGGCGC AGCAGTTTGC TTCTTCAAGT GAGGCGCAGT TTGCGGCCTT TGAGCGCGGC
GTAGCGACGC TCGAACGGCA AACCCGGCTG CACAGTCTGA AAGGCGCCAG TGCCAGCATG
GGGCTGAAAG CATTGGCTCA GCTGGCGGCG GAGCTGGAAA AGGTGCAGGT AAGCGGCAAA
CTGACCGAAA CCCAGTGGCA AGAACAACGC CTGCCAGAAC TCAGGGAGCT CTGGCAGGCG
TCGTTACAGG CGCTGGCTGA GTGGCTTAAG GCCAACGAAT GA
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| Protein sequence | MTPPSLSFSS LSGRLILAFV LLAALLLLLV SLGSVSLQWV KQADHMLYER SLPASDAARE
LVQSAAALTE NTQLLARVSE ENQRELIGRK LSIETANLLS AAEKLRSLGV DTAVDTPNTL
GRDSGEIVSA LAELGNRVGR KLELHDTLTH QAKTLALASA TARELVQAEL AVVDAVLLAK
LSQAYPQQAG QGRSARLLDD IIETELDIQS QLQRALSLIN RIALVAELAD EGTDSGLPLG
DILGEGASDG AVENSLWPLK RVSLLVRDPV RQASLEEETQ RLLHVGAVLT LRADFLNASR
SVNSLQQLLQ DKLFGLSQRL DRALQTQSAK ALEARKDYLR QLSWAGAGLW GTGLAMLLLI
LLVSYRVIYK GIAVRLGEAT GAMHSLARGN TDISLDPHGD DELTAMAEAI EAFKAKTIRN
QELAGELRES ARELASHKAA LEVKVIERTA ELASAREAAE NASQAKSRFL ATMSHEIRTP
LNGLMGTLEL LDKDKSLTES QHQLLGLSRY SAVLLQTLLS DILDFSRLEK GQLKAQPAPV
DFPQLLDEVM NVMLAGASLA GLGLELLTTN VPQYVSLDGP KLRQVLLNLL GNAIKFTQRG
SVVLRVSAEG QRLHFSVTDT GVGMDEATRQ RLFTPYETGH VQGRARGTGL GLAISRELVC
LMADVGPESV NEVGIQVESL QGVGSCFSFS LPLVHCDAPA EAAAQSFVAV SPRRVLLVED
NQVNALVARG YLATLGHEAS WAWDLAEARR LLAAEQFDAL MLDMQLPDGD GRSLLPSLPA
GILVAAFTAQ VDIDAVAGYQ RAGVETVLAK PLSLAALGHW LGDASQTDVS QTDVSRADAS
LAVPVTDAAV HNALRTANPG LLDIEQLELD LDILGRDTLE EMAQQFASSS EAQFAAFERG
VATLERQTRL HSLKGASASM GLKALAQLAA ELEKVQVSGK LTETQWQEQR LPELRELWQA
SLQALAEWLK ANE
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