| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0906 |
|---|
| Symbol | |
|---|
| ID | 4603158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1094830 |
|---|
| End bp | 1095774 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639780241 |
|---|
| Product | homoserine kinase |
|---|
| Protein accession | YP_926783 |
|---|
| Protein GI | 119774043 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0083] Homoserine kinase |
|---|
| TIGRFAM ID | [TIGR00191] homoserine kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGA CCGTGTATGC CCCGGCCTCT ATGGGTAATG TGGGTGTAGG ATTCGATTTG
CTCGGTGCGG CGCTTGCGCC CATCGAGGGC AGTTTACTGG GTGACAGAGT GATGATTGCC
GAGGCGAATG CGGGCCTGAC GCTTAATACC ACTGGCGCCT GGGCCCACAA GCTGCCTGCC
AATCCCAGGG AGAACATCGT TTGGCAGTGT GCCGAGTTTT TCTTACAGCG TTTAGGCAAA
GAAGAGCTTG GTATTGCGCT GACCCTTGAG AAGAACCTGC CGGTGGGTAG TGGTTTGGGG
TCCAGTGCCA GCTCTGTGGT GGCGGCGCTC TATGCCTTGA ACGAATATTT CGACAAGCCG
TTCGATGAGC AGGCGCTGTT GGCGCTGATG GGCGAGTTTG AAGGCAAAAT CAGCGGCTCT
GTGCATTACG ACAACGTGGC GCCCTGTTAC CTCGGTGGTA TGCAGCTGAT GCTGGATTTG
CCCGGGCGCA TCTGCGAGTC CATCCCCAGC TTCGAGCACT GGTATTGGGT GGTGGCGTAT
CCGGGGATTT CACTGTCAAC TGCCAAAATG CGGGCGCTGA TGCCGGACAG CTATGATAAG
TCCGTGGTCA TCGATTTTGG TCGTCACCTG TCTGCTTTTG TGCACGCTTC TTATCGTCAG
GATGAAGCCC TGGCGTTGGC GGTGCTTAAG GATGTGCTGG CCGAACCTTA TCGCGCACCT
GCTATTCCGG GGTATCTCGA GGCCCGAGAT GCGTTGGCTG AGCTTGGTAT GCTCACCAGT
GGAATTTCCG GTAGCGGCCC CACGCTCTTT TCAGTTACTT CCTGCCTCGA GACAGCTGAG
GCGGCCAAGG CCTGGCTGGA AGCCCATTAT CTTACAGAGG GCGGTTTTGC CCACGTGTGC
CGCCTGGATA TGCAGGGCAC CCGAGTCGTA GCGAGTGAAG GTTAA
|
|---|
| Protein sequence | MSLTVYAPAS MGNVGVGFDL LGAALAPIEG SLLGDRVMIA EANAGLTLNT TGAWAHKLPA
NPRENIVWQC AEFFLQRLGK EELGIALTLE KNLPVGSGLG SSASSVVAAL YALNEYFDKP
FDEQALLALM GEFEGKISGS VHYDNVAPCY LGGMQLMLDL PGRICESIPS FEHWYWVVAY
PGISLSTAKM RALMPDSYDK SVVIDFGRHL SAFVHASYRQ DEALALAVLK DVLAEPYRAP
AIPGYLEARD ALAELGMLTS GISGSGPTLF SVTSCLETAE AAKAWLEAHY LTEGGFAHVC
RLDMQGTRVV ASEG
|
|---|
| |