| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0876 |
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| Symbol | |
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| ID | 4603128 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1065384 |
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| End bp | 1066322 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780211 |
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| Product | putative sigma E regulatory protein, MucB/RseB |
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| Protein accession | YP_926753 |
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| Protein GI | 119774013 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3026] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.943319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0573693 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGATCCA TTCTTCTGGC CCTCGTGGCC ATGGTCCTGC CGGTATCTGC CCAGGACCTG
TCTGCCAAGG CCTGGCTTGA GGAAATGAGC CGGGCCCTCA ATCAAGAACA GTTCAAAATG
TCGGTCATTC ATCTTCAGGC CGATCATATA CGTCCTCTGG TGTATCTCCA TGGCAAGGTT
AATGGTCAGG AAGTGGCCTT CCTTGAGCAT CTCAACGGGC CGATAAAAAA TGCGGTTCGC
ATCGATAACC GGGTGACCTT TATCGAGCAC GACCAGCCGG CTTTTACAGT AAATGCCGAC
AGAATTCAGG GGTTGTGGCC AGCGGTATTC GCCAATGACC CTGCTGGTAT CGAGGCGGGC
TACCAGTTTG TGCTCGGTGG CCGTAGCCGT ATTGCCGGGC GACCCGGGCA GTTGGTTCGT
TTTATTCCCA ATGATCCTCA CCGTTATCCG CTACAGGTTT GGGTGGATAT GGAAACCTAT
CTGCCACTGC GCTATGAGTT GCTGACCGAC GAAAAAGAGT TGCTGGAGCA GATCATGGTG
GTAGAACTAT TGGTGCTCGA AGAGCCTGCG CCGCTTTTGG TGGAGGCAGC CAAACAGGAC
TGGCCTCCTG TGATTAATCA ACTGGACAGG CACGATGGTC AAAACTGGAC CTTCACCTGG
TTGCCGGAAG GTTTCAAGGT GGTGGCGCGG GATCATCACA GATTGATGGG CTCACAGGAG
CCTGTGGAGT ATGTCGCGAT CACTGACGGC ATCGCCAATA TCTCTGTGTA TGTTGGCCGT
GCCGGTAATG TGCCCATGCC TGATGAGCTT CTGACCCGCA ATGGTCTCGG GCTTGTCAGC
GAAAAAGTGG GTAATGCCGA GGTGGTCGCG GTAGGGCGAG TACCCATGGC GACTTTGAGC
CGCATTATCC GCAGTTTGGC ACTGGACAAG TCATCATGA
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| Protein sequence | MRSILLALVA MVLPVSAQDL SAKAWLEEMS RALNQEQFKM SVIHLQADHI RPLVYLHGKV
NGQEVAFLEH LNGPIKNAVR IDNRVTFIEH DQPAFTVNAD RIQGLWPAVF ANDPAGIEAG
YQFVLGGRSR IAGRPGQLVR FIPNDPHRYP LQVWVDMETY LPLRYELLTD EKELLEQIMV
VELLVLEEPA PLLVEAAKQD WPPVINQLDR HDGQNWTFTW LPEGFKVVAR DHHRLMGSQE
PVEYVAITDG IANISVYVGR AGNVPMPDEL LTRNGLGLVS EKVGNAEVVA VGRVPMATLS
RIIRSLALDK SS
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