| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0867 |
|---|
| Symbol | thyA |
|---|
| ID | 4603119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1058241 |
|---|
| End bp | 1059035 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639780202 |
|---|
| Product | thymidylate synthase |
|---|
| Protein accession | YP_926744 |
|---|
| Protein GI | 119774004 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0207] Thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR03284] thymidylate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.126958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGT ATCTCGACTT AATGAAGCAC ATCCTCGATA AGGGGACAGA TAAAAGTGAC
AGAACCGGTA CAGGCACCCG TTCGGTTTTC GGTTATCAGA TGCGCTTTGA CCTCAATGAG
GGGTTTCCGC TGGTTACCAC CAAGAAGTGC CACCTGCGCT CCATCATTCA TGAACTGCTG
TGGTTCCTGA AAGGTGAAAC CAATGTGGAT TATCTGCACG AAAACAAGGT GTCGATTTGG
GACGAGTGGG CCGATGAAAA GGGCAATCTG GGACCTGTCT ATGGCGCCCA ATGGCGCAGC
TGGCCAACCC CTGATGGCCG CCATATTGAT CAGATTTCTC AAGTTATTGA GCAGATTAAA
GCCACGCCGG ACTCTCGCCG GTTAATCGTA TCAGCCTGGA ACGTGGGAGA GCTGGATAAA
ATGGCGCTGG CACCCTGCCA TGCGTTTTTC CAATTTTACG TGGCCGATGG CAAACTGAGC
TGCCAGCTCT ATCAGCGTTC CTGTGATGTG TTCCTGGGCC TGCCGTTTAA TATTGCCAGT
TATGCGCTGC TGACCATGAT GGTGGCGCAG CAGTGTAATC TTGGCTTGGG CGATTTCGTT
TGGACCGGTG GGGATACCCA CCTCTACAGC AACCACATGG AGCAGACTCA ATTGCAGCTC
TCACGGGAGC CTCGTCCTCT GCCCACCATG AAGATCCTCC GCCATCCAGA GTCGATTTTT
GATTACCGTT TCGAAGACTT TGAACTCAGT GGTTACGACC CCCATCCCCA CATCAAGGCG
CCCGTTGCTA TCTAA
|
|---|
| Protein sequence | MKQYLDLMKH ILDKGTDKSD RTGTGTRSVF GYQMRFDLNE GFPLVTTKKC HLRSIIHELL
WFLKGETNVD YLHENKVSIW DEWADEKGNL GPVYGAQWRS WPTPDGRHID QISQVIEQIK
ATPDSRRLIV SAWNVGELDK MALAPCHAFF QFYVADGKLS CQLYQRSCDV FLGLPFNIAS
YALLTMMVAQ QCNLGLGDFV WTGGDTHLYS NHMEQTQLQL SREPRPLPTM KILRHPESIF
DYRFEDFELS GYDPHPHIKA PVAI
|
|---|
| |