Gene Sama_0788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0788 
Symbol 
ID4603040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp970492 
End bp971304 
Gene Length813 bp 
Protein Length270 aa 
Translation table11 
GC content56% 
IMG OID639780122 
Producttranscriptional regulator 
Protein accessionYP_926665 
Protein GI119773925 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCAGG AATTTGCCAA AAATCTTCGC CTCCTTTGCA GCTACTACCG CTCGGTGGCC 
GAAGTCTGTC GTCGCCTCGA TATCAACCGG CCTCAGTTCA ACCGCTATTT AAGCGGCAAG
TATCGCCCCT CGGCACATAG CCTGAGGCGC CTGTGTGACT TCTTTGGGGT GGAAGAGCAT
GAAATTCTCA TGCCCCACAG CCAGTTTCAG CTGCTTATTC AGGTGCGGCC ACGCCCCAGT
GAGCCTGTGA GTGAGGCCCC TGAGCTGGAG CATCTGGCCA GGCTGCAAAG CTTAAGTCAG
GGGCTCGATA AGTACCTTGG CTATTACTTC GAATACCACC TGTCGATGGC GTTCCCGGGC
AAAATTTTGC GCAATCTGGT GTGCCTTGAG AAACAGGGTG GCAAGGTGTA CTACCAGCGC
ACCGAGCGCC TGCAGCAGGC ACCCGGTGAA AAGGTGTATC ACAGTAAGTA TTTCGGTATG
GCGCACTTGT TGGCAGACCG TATCTTTTTA ATGGATTATG AGTCGCTTAC CGGCAACCAG
CTCACGCAGA CTATCCTTAT CCCCACCTTC AAGAGCCGGG TTGGCCGCTT AAGCGGTCTG
CGCCTTGGCG CGTCGGCCAG CGGTGAGCGT ATCCCCAGCT GCACCCGGGT GGTGTTCGAG
TATCTTGGGC ATCAGGTGGA TATCCGCAAA ACCCTTAAGC TTTGCACCAC CCTGGACCCC
GACAGCGGCC AGATAAGCCC ACGAATTCTG GAGGCCATTC AAAACGATAT GGCGCCGGGC
GAGCGGCACT TTCGCGCCCG CCACAGCTTT TAA
 
Protein sequence
MHQEFAKNLR LLCSYYRSVA EVCRRLDINR PQFNRYLSGK YRPSAHSLRR LCDFFGVEEH 
EILMPHSQFQ LLIQVRPRPS EPVSEAPELE HLARLQSLSQ GLDKYLGYYF EYHLSMAFPG
KILRNLVCLE KQGGKVYYQR TERLQQAPGE KVYHSKYFGM AHLLADRIFL MDYESLTGNQ
LTQTILIPTF KSRVGRLSGL RLGASASGER IPSCTRVVFE YLGHQVDIRK TLKLCTTLDP
DSGQISPRIL EAIQNDMAPG ERHFRARHSF