Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0622 |
Symbol | |
ID | 4602875 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 775744 |
End bp | 777363 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639779957 |
Product | putative methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_926500 |
Protein GI | 119773760 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.321986 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATGGT TTAATAACCT TCCCATCTTT AAAAAAGTCG GTGTCATCTT CATCATTTCG GTGATCATCT TTGCGGTGAA TCTGGCCATC AGTCTGGTCT CTATCAATAA AAATCGCGAA ACCCTGGGAT TTATGGAAGA GAAGATTTAC CAGCGGGTTG AACTGGCCAA CCAAAATTTG ATGTTGGTGC AGCGGCTTGA GGAGGTATAC ACCCAGGCGG TGTCATTTGC CGATGAAGAC CTATTGGAGC AAGCCGGCAG CCTGCATGAC AACCTTGCCG CCAACCTTAC GTTGTTACAG AGCTCAGACA TAAAAGAAAC CGACACGCTT CGACAGATGC TGTCGCAGCT CGCCAGCTAT AACCAAATAA CCTCTGGCCT GGCAAAGAGC ATGTTGGATG GAACTGCAGA CATGGCCAAC ATAGGCGCCA TCAGTCAGAA AAAGTCCGCT GTGTATGAAA CCCTGCTGGG TCATGTGCAG CAATACAAGC AGGCCAAGGT ATTGGAGTTC AAAAATACCA TCAAGGAGGC AGCAGACAGA TCGCAAAACA GTCTCTGGTT GACCATGGTG GTGGGAGTGG TGCTGCTGCT GTTTATGGCC ATAGTGACCA TATCCATCGC CCGTGCTATC AGCGCCAGTG CTAAAGGGGT GGCCCATTCC CTTGGTGAAC TCGCCGATGG CAAGGGAGAT TTGCGCCACC AACTACCAGC CAGCAGTCGG GACGAACTCG GGCAGGTATC CGGTAACTTC AATCGCTTTT TGGGACTCCT GGCAGGCTCA ATCCAGAGGG TGGTGAATGT AACCTCGCCG TTACTCAACA ACGCCCATGA TTTGAAAGAC AAGATGGAAA CGGCAACGGG CGCTACCCAG CGTCAGAGTC ATGATGCTCA AACCGTTCAG GCATCTATGG AAGAGATGCG GCTGTCGGTA ATTGATATTT CCCATAATGC CAGTCAGGCG GCAGATGCAG CGCAAATAGC AGAGCGTGAA GCCATGGACG GGATGGCGGT GGTGCAGCGT ACCATGGACA TCTCCCTGGA GTTGAACCGC GAAATTGAAC ATGCGGCCAA CGCCATTAAT GAATTGGCAA AAGATACTGA AAGTGTCAGT TCGATACTGA ATGTCATCAC CTCCATCGCC GAGCAAACCA ACCTGTTGGC ACTGAATGCG GCCATTGAGG CTGCCCGCGC CGGAGAGCAG GGCAGAGGTT TTGCCGTTGT AGCAGACGAA GTGCGTGCTC TGGCTTCGAA AACCGCCGAT GCCACCAAGG AAATTCGTGA GGTGCTGACC AGGCTCAAGG GCGCCGCAGA GTCGTCAGTC AGTACCATGA CGGTGGCCAT GTCCAAGTCG AGTGAGAACG AGGAGCATGC CCAGAAGACG GGGTTGGCAC TCAAGACGAT TCAAGAACAA ATTGTCAGTA TCAATGCCAT GAACACCCAT ATTGCCAGGT CAACCGATGA ACAGTCTCAG GTGGCCTCCA GGGTGGTGGA TAATGTGGTG GATATGAATG CTTCATTCGA ACAAACCCTG AGTATTCTGG ATCAAGTGCA TCAGGTCTCG TCGGAATTGT CAGAGTTTGC CGAAGAGCTG CAAAGCGCCA CGTCTCAATT TAAGCTTTAA
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Protein sequence | MTWFNNLPIF KKVGVIFIIS VIIFAVNLAI SLVSINKNRE TLGFMEEKIY QRVELANQNL MLVQRLEEVY TQAVSFADED LLEQAGSLHD NLAANLTLLQ SSDIKETDTL RQMLSQLASY NQITSGLAKS MLDGTADMAN IGAISQKKSA VYETLLGHVQ QYKQAKVLEF KNTIKEAADR SQNSLWLTMV VGVVLLLFMA IVTISIARAI SASAKGVAHS LGELADGKGD LRHQLPASSR DELGQVSGNF NRFLGLLAGS IQRVVNVTSP LLNNAHDLKD KMETATGATQ RQSHDAQTVQ ASMEEMRLSV IDISHNASQA ADAAQIAERE AMDGMAVVQR TMDISLELNR EIEHAANAIN ELAKDTESVS SILNVITSIA EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRALASKTAD ATKEIREVLT RLKGAAESSV STMTVAMSKS SENEEHAQKT GLALKTIQEQ IVSINAMNTH IARSTDEQSQ VASRVVDNVV DMNASFEQTL SILDQVHQVS SELSEFAEEL QSATSQFKL
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