| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0554 |
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| Symbol | |
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| ID | 4606035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 682208 |
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| End bp | 684316 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639779890 |
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| Product | putative transcriptional regulator, CadC |
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| Protein accession | YP_926433 |
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| Protein GI | 119773693 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.55771 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0164253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAAT TGAGACTGGC AATGGCAGAA TCGCCCCATA CTCGATTTAA ATTAAATAAC
TTCATTATCG ATTGTCATAA CATGACGATC GATAATGGAG ATAAATCGGT AAAGCTTCCC
ATAAAGGTCT TTGATTATCT TAAACTTTTC TTGTTTAATG AAAATCATAT CGTTGAACAC
GAAGATGCAA TAAACCGAAT TTGGAACGGC AATGAAGGAG TTGGCAAGCG TGGTTATATT
AATGCCATGT GGCAAATTCG AAAGGCATTT ACCGACCTTG GCGCCGACTG TGACGAACTA
TTTAAAACAC TCCCCAAAGT CGGCTACGTT CTCACAGTAA CACCCGAACC TATCCCACGG
CTTGCCGTCC CCGCCCCAAC ACGGAGATGG CCTTTGCTGG TGTTGATCTC ACTGATGTTG
TTGGCAGGCC TAGCGTCTTA CTCCCTTATT CAAAACCGAA AGTTTGGTCC GGCACAGGAA
CAAATTGAAG ACACCATGAA GTTTCCTGCT CTGACGAGCG TGACAAACTT TCAAGGTGTG
GAAGAGCATC CCGCGATTTC GAATGACGGC AATATGCTTG CATTTCAATG GCTTCAAGAG
AACAGGCATA GTGGGCTATA CATTAAAGAT TTAAGTGACA GCAAGAATCC ACTGCGACTC
GTTTCATCCG GTAAATACCA GGAAGCCCTG CCGATCTGGT CTCCTGATGA TACCGCCCTT
GCCTATGTTC GCATCGACGA CAAAAATCAA TGCCAGATAA GAGTCAAACA GCTGCGCACT
CAGCAGGAAA AGTTAATAGA TACCGACTGT GGTTATGTTG AATTCAAAAA AATGTTGGAT
TGGTCGCCCG ATGGGAGAAT GTTGCTCTAT CCAAAGCGAA TAAATGGCAT TTTTGCATTT
TTTAAATATG ACTTTGTCAC TGAGAAAACC ACGCAAGTCA GTTTTCCAGA AAAAAACACC
AGCGATTTTA TGGGTATTTG GTTAGAAAAT AATCAAGACA TTGTCGTAGT TCGAGAACAA
GCACAACAAT ACAAGCTGAT TCTGTTGCAG CCCTCAGGGC AAGAAAAAAG CTTGCTTGAT
TATAAAGAAT CTATTACGGG TTTAACCCGA GGCAAAGACA ATAACCAAGT TTTTGTTAAT
TTCTCGGAAA ATGGAAAAAT TGCCACTTAC CTTTTGAGTT TTAATAATAT AGATGCACCT
GAATTAAAAT TGATAAATCA GCTAAGTGGT GCTTCTGGCC TGAGCTTTAA TCACAAAACC
AATGAGCTTC TTGTCGCAAA ACATCAGTCA AGTGAATATA TAGTACAGCG CAGATTTGAT
AGTGCTCAAA TCGTTCGAAG AGTATTCTCT TCTAATCGCG ATTTATACGG TCAATTCATC
TCAGATCCTG AAAATATTGT CTTTGTCTCA AATCGTTCGG CAAATTGGGA CCTATGGAGA
CAGAATGAGC AGGAGGCTCG CAATCTCACC AATGGTATAG GGACAGTAAA CTTCGCATCT
GTGTCCCCTG ATGGAAAACA TTTCGCCACC GCACTCGTCA AAGAGGGGGA TGACAAACAG
CGTTTATATA TTGGTAATGT ACAGGATGGA CATTTAATTA GAGTTGATAC GGGTAGTTTG
ACACCTACTT TTCCAACGTG GTCACTCGAT GGCTCCCTGG TTTATTTCTC TGCGATTAAG
AATAATCATA ATGGCATCTA CCAGTTAGAT ATTAAAACAT CAACAACCAC ACAATTAACA
TTCACTGATG AGATATATGC CATCCCAGCG GGGAATGACC AACTATTAGT TTCTCGTACA
AATGAGGATG GTATTTGGCG ATTTGATATA AATTCAAACC AATTCAGCCA AATTGTAACT
GATTTATCGA TTAACGATTT TGGCAGCTTT TTTATTCAGG ATGATGAGCT TTACTACCTT
ACCAGAACAA AACAGAGTGA CATAATTAAA AAATATCAAG AAAATGACAA TGATGCTATC
TTAGCGATCT ACCCCGCAGA CTCAGTCAGG AAGTACTTTG GAATTTCAAA AGGTGACAGT
GATAGTTTTC TGATCACTTT AAACAGCATT TATGATGCGG ACATATTTTC GTTTCCAGTA
ACATTTTAA
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| Protein sequence | MIKLRLAMAE SPHTRFKLNN FIIDCHNMTI DNGDKSVKLP IKVFDYLKLF LFNENHIVEH
EDAINRIWNG NEGVGKRGYI NAMWQIRKAF TDLGADCDEL FKTLPKVGYV LTVTPEPIPR
LAVPAPTRRW PLLVLISLML LAGLASYSLI QNRKFGPAQE QIEDTMKFPA LTSVTNFQGV
EEHPAISNDG NMLAFQWLQE NRHSGLYIKD LSDSKNPLRL VSSGKYQEAL PIWSPDDTAL
AYVRIDDKNQ CQIRVKQLRT QQEKLIDTDC GYVEFKKMLD WSPDGRMLLY PKRINGIFAF
FKYDFVTEKT TQVSFPEKNT SDFMGIWLEN NQDIVVVREQ AQQYKLILLQ PSGQEKSLLD
YKESITGLTR GKDNNQVFVN FSENGKIATY LLSFNNIDAP ELKLINQLSG ASGLSFNHKT
NELLVAKHQS SEYIVQRRFD SAQIVRRVFS SNRDLYGQFI SDPENIVFVS NRSANWDLWR
QNEQEARNLT NGIGTVNFAS VSPDGKHFAT ALVKEGDDKQ RLYIGNVQDG HLIRVDTGSL
TPTFPTWSLD GSLVYFSAIK NNHNGIYQLD IKTSTTTQLT FTDEIYAIPA GNDQLLVSRT
NEDGIWRFDI NSNQFSQIVT DLSINDFGSF FIQDDELYYL TRTKQSDIIK KYQENDNDAI
LAIYPADSVR KYFGISKGDS DSFLITLNSI YDADIFSFPV TF
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