| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0506 |
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| Symbol | |
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| ID | 4602761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 619784 |
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| End bp | 620713 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779842 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_926386 |
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| Protein GI | 119773646 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.95991 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCTGAAT TAACCGCCTC GGCCCGTGCG GCCCAACCCT CTTATGTGGT CTTGCCACGG
GATAACCCCA ACACCACGGT ATTTGGTTTT TTGTGTAGCC ATTTCGCCCG TATTGGTGAA
GAGGTTTGGC GTCGCCGCAT TCTCGATGGC AAGGTGCATT GGCAGGATGG CATGCTCATC
ACCCTGCAAA CCCCTTATCG CCCCACGGCG CGGGTTTACT ACTACCGCGA AGTTGTGGCC
GAGACCAAAA TCCCCTTTCG CGAAAAAATA CTGTGCCGCA ATGAGCATAT GATGCTGGTG
TTCAAACCGC ATTTTTTGCC GGTGACCCCT TCGGGTAACT ATGTTAACGA GTGTCTGGTG
CATCGGCTGC GGCTTGCCAC TGGCATCGAC ACCATCAGCC CGGCCCACAG ACTCGACAGG
GAAACCGCCG GTGTTATCCT GATGAGCCTC AATCCCGAAA CCCGGCATCA GTACCATCAG
CTTTTCTTGA ATGGTGGAAT ACGAAAAGAC TACGAAGCCA TTGCACGGCT GACGCCTGAA
CTGATGGCAC TGCATGGCGA TGGGCAAAGT TTGCCGCAGC GCTGGACAGT GAAAAATCGC
ATGCAACCGG CAGACCCGTC GTTTTTGATG CAGGTAGTAC CGGGAGAGGC CAACAGCCAC
TCTGAAATCG CCTTGCTCAT GGTGAAGGAT GGCCGCGGTT TATTTGAGCT CAGCCCCATC
ACCGGCCGCA CTCATCAGCT GAGGGTGCAC ATGCAGAGTC TGGGCATGCC GTTGGAAAAC
GATCGCTTTT ACCCGAGCCT GCAGCCCCAA TCGGCAGATG ACTTTAATGC CCCCTTAAAG
CTGGTGGCCA AGCGACTCAG ATTTACCGAT CCTGTCACCG GCGAAAAGCT GGATGTGGGT
TGTGATGGGT TTGCAGGTGA ATTCAGTTAG
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| Protein sequence | MSELTASARA AQPSYVVLPR DNPNTTVFGF LCSHFARIGE EVWRRRILDG KVHWQDGMLI
TLQTPYRPTA RVYYYREVVA ETKIPFREKI LCRNEHMMLV FKPHFLPVTP SGNYVNECLV
HRLRLATGID TISPAHRLDR ETAGVILMSL NPETRHQYHQ LFLNGGIRKD YEAIARLTPE
LMALHGDGQS LPQRWTVKNR MQPADPSFLM QVVPGEANSH SEIALLMVKD GRGLFELSPI
TGRTHQLRVH MQSLGMPLEN DRFYPSLQPQ SADDFNAPLK LVAKRLRFTD PVTGEKLDVG
CDGFAGEFS
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