| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0496 |
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| Symbol | |
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| ID | 4602751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 608979 |
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| End bp | 611282 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639779832 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_926376 |
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| Protein GI | 119773636 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.788805 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGAGC CTGGATGGAA CGGTCAGTGC GAGTTGCTGT TAATTGCGGG GGGGCTTATC
GTGGGTAAAC TGTTTGCCAG TGCCCGTAAA CTTGATGAAC AGCCGCTTCA GCCTGAGGCG
CCTGTTGCAC CCTGGATCAT CGGTATTATT GACGATGAGC CTGCCATTCA CGATGTCACC
CGTTTGGCCC TGAAACATGT TCGTGTATTC GGACGGCCCC TTGAGTTTGT ATCGGCATTC
AGTGCCAAAG AAGGCTTCGA CCTGGTGAAA AAACACCCCG AGATGGCATT GGTGCTGCTC
GACGTGGTGA TGGAAACCGA TGAAGCCGGT TTGATGCTGG TGGACCGTAT TCGCAATGAA
CTCGATAACC ACCTGTTGCA AATTGTCCTC CGGACAGGCC AGCCAGGTTA TACCCCCGAA
GAAGAAGTTA TCCTCAAGTA CGAAATTAAC TCCTACAAGA CCAAGAGCGA GCTGACGCGC
AATAAGCTGT TTACCGTGGT GGCAACCGGA CTGAGATGCT TCAGTCAGAT GGATGCGTTG
GAGCGCAGTC GTCAGGGATT AAGGTCGGTG ATTAATGCGG CCGCCAATCT GTTTCAGGAA
CGATCGCTCC ATGAGTTTGC CGGCGGGGTG CTCGAGCAAA TCGATGCCCT CTTCAACATC
AAGGCCGATA GCCTCTTCTG TGTATCCAAA CGGCCGATGA ACGGGCCCTT TGCCATAGAT
TCCGGTAATC ACGAGTTTTT TGTGGTTGCT GCCAGCGACA AGTTCCGCCC CTTCTACGGT
AAAAGTCTGG ACGAGCTGAG TCCCGAGCTT GAACAGCGCA AGCTGGTGCA GGAAACCCTC
AACGCCCACC AGCATGTATT TCATCCCAAT TGCAGCTGCT TATATCTGTC GACGCCATCG
GGCTGGCAAG GCGTTATCGT CGCGGAAAAT GCCACCGGTC TGACCAAGGT GGATCAGGAG
CTGTTACAGG TGTTTTGCCT GAATGTGGCG CTGGGGCTGG AAAATGCCAA GTTTTTTGCT
CACCTCAATA AGGCGGCCTT CTTCGATGAG CTCACCGGCC TGCATAACCG CGCCGGATTG
GTGGAATATG GCGCCAGCTT CCTGAAACAA TTTGACCCGG GAGCTGCGAG TCTCTTTATG
GTGGATATCG ATTATTTCCA TCAGATTATC GAGTCTCTGG GTTACGAGTT TGGTAACAAC
ATTCTGGAAA AAATGTCCCG GGTATTGCGT AAAGAGTTTT CCACCCGCGC CCTGATTGCC
CGCTTGCATG CGGATGTGTT TGCCGTGCTG TTGCCGGAGT CAAAGCTGAC GGCCCATGAA
TTGGCGGTGC GCTGCGCCAA GCCACTGATG ATAGATGAGC AATCGATTCG ATTGGGGCTG
ACAGTGGGCT GCTCTGTGCT GGATGCCGCG CAGGAGCCGG ATATGGAGCA GATGCTCCGG
CATGCTGAGT CGGCGCTGAA AGTTGCCAAG GAGCACAGGC GTGGCTCTGG AGAGACCTTC
AATAAGCGCT ACGAGCAGGC CTCAAGAGAC AGCATGACTG TGTTGAGTGA CCTGCGTATT
GCACTGGATA ACAGAGAGCT CTATCTGGTG CTGCAACCCA AGGTGAACAT ACACACCGGT
GCCGTAGTGG GCTATGAAGC CCTCATCCGC TGGCAGCATC CGGAAAAGGG GAATATCCCC
CCGGGAGCCT TTATTCCTGC GGTGGAAAAA TCGGGACTCT ATTACGGCCT GGATCTCTAT
GTAGCGCGGG CGGCCTGCGA GCTTATGACT CAGCATCCTG AGTTGAATGT GCCTGTGTCA
TTGAATATTT CTGCCAATTC ACTCCATCAC GAGACCTTTG TCGACGATCT CAAGGCCGAG
TTTCTCCGTG CGGGAGTGCC CTTCGACAGG GTAGAGCTGG AAATCACCGA AAATGCACTG
GTGCACTCAG ACCGGGCCAT CAGTGAGCTG CATAGGCTGC ACCAGAGCGG CTTTATCATC
TGTTTGGATG ACTTTGGGGC CGGTTTCTCA TCGCTGGGAT ACTTATTGAG ATTGCCGATA
CAGGTCATCA AGATTGACAG GGCCTTTATC TCTCATCTCA CCGACAGCGA TGAAGCTATC
GCCGTGTTGC AGGGCATCTT GCGCATAGGG CGTGATCTCA ATAAACAGCT GATCATTGAA
GGGGTTGAAA CCGAAGCGCA ACTGGAGCTG CTTAAATCCA TGCAGGTGGA TTTTGTGCAG
GGATTTTATT TCCACCGACC TTTGCCAGTT AGTGAGGCGT TGGCGCTGCT CGAACCTGTG
CGGAGTACCA CTTCATATCT TTAA
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| Protein sequence | MQEPGWNGQC ELLLIAGGLI VGKLFASARK LDEQPLQPEA PVAPWIIGII DDEPAIHDVT
RLALKHVRVF GRPLEFVSAF SAKEGFDLVK KHPEMALVLL DVVMETDEAG LMLVDRIRNE
LDNHLLQIVL RTGQPGYTPE EEVILKYEIN SYKTKSELTR NKLFTVVATG LRCFSQMDAL
ERSRQGLRSV INAAANLFQE RSLHEFAGGV LEQIDALFNI KADSLFCVSK RPMNGPFAID
SGNHEFFVVA ASDKFRPFYG KSLDELSPEL EQRKLVQETL NAHQHVFHPN CSCLYLSTPS
GWQGVIVAEN ATGLTKVDQE LLQVFCLNVA LGLENAKFFA HLNKAAFFDE LTGLHNRAGL
VEYGASFLKQ FDPGAASLFM VDIDYFHQII ESLGYEFGNN ILEKMSRVLR KEFSTRALIA
RLHADVFAVL LPESKLTAHE LAVRCAKPLM IDEQSIRLGL TVGCSVLDAA QEPDMEQMLR
HAESALKVAK EHRRGSGETF NKRYEQASRD SMTVLSDLRI ALDNRELYLV LQPKVNIHTG
AVVGYEALIR WQHPEKGNIP PGAFIPAVEK SGLYYGLDLY VARAACELMT QHPELNVPVS
LNISANSLHH ETFVDDLKAE FLRAGVPFDR VELEITENAL VHSDRAISEL HRLHQSGFII
CLDDFGAGFS SLGYLLRLPI QVIKIDRAFI SHLTDSDEAI AVLQGILRIG RDLNKQLIIE
GVETEAQLEL LKSMQVDFVQ GFYFHRPLPV SEALALLEPV RSTTSYL
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