| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0387 |
|---|
| Symbol | hemE |
|---|
| ID | 4602643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 478996 |
|---|
| End bp | 480060 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639779724 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_926268 |
|---|
| Protein GI | 119773528 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAT TGAAAAACGA TCGTTACCTG CGCGCCCTGC TTAAACAACC CGTGGATGTC
ACTCCCGTTT GGATGATGCG TCAGGCGGGC CGTTATCTTC CTGAATACCG TGCAACCCGT
GCCCAGGCCG GTGACTTTAT GTCACTGTGC AAAAACGCCG AACTGGCCTG CGAAGTAACG
CTGCAGCCAC TGCGCCGTTA CGAGCTGGAT GCGGCTATCC TGTTCTCTGA TATTCTGACC
ATTCCCGATG CCATGGGCCT GGGTCTGTAC TTTGAAGCCG GCGAAGGCCC ACGTTTCGAG
CGCAAGGCCG ACACCCTGGA AGCCATCAAG GCACTGCCTA TCCCGGATCC CGAAGATGAG
CTGGGCTACG TGATGCGTGC CGTGAGCACC ATCCGCCGTG AGCTTAAGGG TGAAGTTCCT
CTGATTGGTT TCTCCGGCTC GCCATGGACC CTGGCCACCT ACATGGTGGA AGGTGGCTCC
AGCAAGGCGT TCGAAAAAAT CAAGCGTATG ATGTACTCAG AGCCAATGGC ATTGCACCTG
TTGCTGGACA AGCTGGCCGA CTCGGTCATC CTGTACCTGA ACGCGCAAAT CGCCAATGGT
GCTCAGTCGG TGATGATTTT TGACTCCTGG GGCGGCGCCC TGTCTCACAG CGCCTACCGT
GAGTTCTCCC TGCGTTACAT GCAGAAGATT GTTGACGGCC TGACCCGCGA AGCCGATGGC
CGCAAAGTGC CTGTGACCCT GTTCACCAAG GGTGGCGGTC TGTGGCTCGA ATCTATGGCC
GAAACCGGCT GTGATGCCCT GGGTCTGGAC TGGACCGTGG ACATCGCCGA TGCCCGCCGC
CGCGTAGGCC ACAAGGTTGC GCTGCAGGGC AACATGGACC CATCCATGCT GTACGCGCCA
ATCCCACGCA TCGAAGAAGA AGTTGAGCAA ATTCTGGCTG GCTTCGGCGA AGGTACTGGT
CACGTGTTTA ACCTCGGCCA CGGTATCCAT CAGCATGTGG ATCCTGAGCA CGCAGGCGCC
TTCATCAAGG CCGTACACGA GAAGTCGCGC AAGTATCACA AGTAA
|
|---|
| Protein sequence | MAELKNDRYL RALLKQPVDV TPVWMMRQAG RYLPEYRATR AQAGDFMSLC KNAELACEVT
LQPLRRYELD AAILFSDILT IPDAMGLGLY FEAGEGPRFE RKADTLEAIK ALPIPDPEDE
LGYVMRAVST IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKAFEKIKRM MYSEPMALHL
LLDKLADSVI LYLNAQIANG AQSVMIFDSW GGALSHSAYR EFSLRYMQKI VDGLTREADG
RKVPVTLFTK GGGLWLESMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAP
IPRIEEEVEQ ILAGFGEGTG HVFNLGHGIH QHVDPEHAGA FIKAVHEKSR KYHK
|
|---|
| |