| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0106 |
|---|
| Symbol | |
|---|
| ID | 4602363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 119428 |
|---|
| End bp | 120150 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639779418 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_925988 |
|---|
| Protein GI | 119773248 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00105806 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAGTGA TCCCCATGGC GGGGCTAAGC TCCCGCTTTT TCAACGCTGG CTACACCCAG
CCCAAATACA TGCTCGACGC TGGCGGCATG CCACTGTTTG ACCACGCCCT GCTCAGCTTC
GCGGCCTATT TCGGCACTAC GCCTTTTTTG TTTATTGTGC GCGACCTGTA TGACACAGCG
GCCTTCGTCA AAACACGCTG CAAGGCACTG GGCATCAAAG ACTTCAAGAT TGTTGCCCTG
GAGCAGCCAA CCCGTGGACA GGCTGAAACC GTGTACCTGG GACTGACGGA TGTAGCAGAC
ACCGAGCCAC TGACAATTTT CAATATAGAT ACCTTCAGAC CCGGATTTAC CCTGCCCCCC
ATAGCCGATA CGGCCGATGG CTATCTGGAA GTATTCAAAG GTGAAGGCAG CAACTGGTCC
TATGCCAAAC CCGCCGATGC CAAAAGCACC CGCGTCGTGC AGACAACCGA AAAGCAACCC
ATATCCGACC TCTGCAGCAC AGGGCTTTAT TATTTCCGTC AAACCGCCGA TTTTCGCCTT
GCCTACGAAA CGGAAGCCGC GCGGCCTGCA AGCGAGTGGC AAAAGCAGGA GCTTTATATA
GCACCGCTTT ACAACCACCT GATAGCCCGG GGTAAGAACA TTCACTACCA CCTTATCGAT
GCCAGTGACG TGATTTTCTG TGGGGTGCCA GAGGAATATC AGGCCCTGCT GGCCCAATAT
TGA
|
|---|
| Protein sequence | MIVIPMAGLS SRFFNAGYTQ PKYMLDAGGM PLFDHALLSF AAYFGTTPFL FIVRDLYDTA
AFVKTRCKAL GIKDFKIVAL EQPTRGQAET VYLGLTDVAD TEPLTIFNID TFRPGFTLPP
IADTADGYLE VFKGEGSNWS YAKPADAKST RVVQTTEKQP ISDLCSTGLY YFRQTADFRL
AYETEAARPA SEWQKQELYI APLYNHLIAR GKNIHYHLID ASDVIFCGVP EEYQALLAQY
|
|---|
| |