| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2956 |
|---|
| Symbol | |
|---|
| ID | 4081072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 3099168 |
|---|
| End bp | 3099875 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 638011341 |
|---|
| Product | putative transmembrane anti-sigma factor |
|---|
| Protein accession | YP_617994 |
|---|
| Protein GI | 103488433 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00524194 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.11263 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTCG ACCCCGCCAC CGTCGCGGCC TATGTCGACG GCGAACTCGA CGACCTGACC
GCGCGCCGCG TTGCGCGCGA GGCCGCGAGC GACCCGGCGC TTGCTGCCGA AATCGCGCGC
CACCGCGCGC TGAAGGCGAA GCTTGTGGCG CATTATGCCC CCGTCGCCGC CGAGGCTCTC
CCCGACCGGT TCCGCGCGCT GCTGACCGGC GCACAGGAAC CCCCCGTGAT CGACACCAGC
CTCGCCGCGC GCCGCGAGAG CCGGCGTTTG CGCTTTGCGC CCGCGCATAT GGCCGCGATC
GCCGCCTCGC TGCTGCTCGG CCTGACGATC GGTTTGCGGC CGTGGGCGCC CGCGGCGGAC
GTGACCGAAC GCGGCGGCGC GCTCGTCGCG TCGGGCGAGC TGGCGGCGGC GCTCGATACG
CAGCTTGCCG CGACCCAGGG CGCCGACGCC GCGATCCGCA TCGGCCTCAG CTTTCGCGAT
CGAGAGGGCC GCATCTGCCG CAGTTTCGAA GGCGCCGCCC TGTCGGGCAT CGGCTGCCGC
GAAGCCGATG GCTGGGCGCT CGAACGCACG ATGGGCGGGC GGACGGGCGG CGCCTATCGC
CAGGCAAGCT CGGGCGCGCT GGCGGCCGAC GCGGCGGCGA TGATGGTCGG CGAACCTTTT
GACGCCGCCG CCGAACGCGC CGCGCGCGCG CGCGGCTGGC GGCGCTGA
|
|---|
| Protein sequence | MSFDPATVAA YVDGELDDLT ARRVAREAAS DPALAAEIAR HRALKAKLVA HYAPVAAEAL
PDRFRALLTG AQEPPVIDTS LAARRESRRL RFAPAHMAAI AASLLLGLTI GLRPWAPAAD
VTERGGALVA SGELAAALDT QLAATQGADA AIRIGLSFRD REGRICRSFE GAALSGIGCR
EADGWALERT MGGRTGGAYR QASSGALAAD AAAMMVGEPF DAAAERAARA RGWRR
|
|---|
| |