| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2549 |
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| Symbol | |
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| ID | 4081464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2687221 |
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| End bp | 2688693 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 638010926 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_617588 |
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| Protein GI | 103488027 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCACG CACTTTCCGC GCGGGCGCGG CTCCTTCTGG CCGCAGCGGC GATTGCCCTG
GTCGGGGGTG CCGTTGGCTA TGGCGTGGCC AGCTTGAGCG GCACCGGGCC GGCAGCCGAG
AGGACCGAAG GGGACCGCAA GGTGCTCTAC TGGTATGACC CCATGTATCC CAACCAGCAT
TTCGACAAGC CCGGCAAGTC GCCGTTCATG GATATGGAGC TCGTCCCCAA ATATGCCGAT
GAGGCAACAA GCGAGGCAGG GGTGCGCATC GATCCGGCGC TCGTCCAGAA TCTGGGCGTG
CGCACGGCCG AGGTCCGCCG CGGCACGCTG GGCGGCGGCC TCTCGGCCAC AGGCGTCATC
GGCTATAACG AGCGCGAGAT AGCGATTGTC CAGCCGCGCG CCGGCGGCTT TGTCCAGCGG
ACCTATGGGC GGGCGCCCGA TGACGTGATC GAAGCAGGCG CGCCGCTGGT CGATCTGCTT
GTGCCGGACT GGGGCGGCGC ACAGGCCGAG TTCCTGGCGG TGCTGCGCAC GGGCGACAGG
GCCCTGGCAA GCGCCGCGCG CCAAAGGCTG GTGCTGCTCG GCATGCCGCA ATCCACCATT
GCCGCCGTCG AACGCAGTGG CAGGCAGCGC AATGTCATTA CCATCAACTC GCCGATTGGC
GGGACGATCA AGTCGCTCGG CGTGCGGCAG GGTATGAGCG TGATGGCGGG GCAAACGCTC
GCCGAAGTAA ACGGGCTCGG CACGGTGTGG CTCGATGCCG CGGTCCCCGA AGCCATGGCG
GGACGATTGC GGCCGGACAT GCCGGTGACG GCGACGCTGG CAGCCTATCC GGGCGAGAGT
TTTGCGGGCC GGATTCGGGC GATCCTGCCG CAGGCTGAAA CCGAAAGCCG GACCATCACC
GCGCGCGTCG AGATCCCCAA TCGCGGCGGG CGGCTGCGGC CAGGCATGTT CGCCACCGTC
AGCTTCGCTG GCGAGCAGCG CCCCGCGCTG CTCGTACCCT CCGAGGCGCT GATCCGCACG
GGCAAGCGCA CGCTCGTCAT GCTGGCGTTG GATAAGGGAC GCTATCAGCC GGCCGAAGTC
AGAACGGGAA TGGAAGCGGA CGGCCAAACC GAAGTGCTCG CCGGACTTGC CGAGGGTGAG
AAGGTCGTCA CCTCGGGCCA GTTCCTGATC GATTCCGAAG CCAGTCTTTC GGCAATGCAG
GCGCGGCCGA TCGCGGGTGG TTCGCCGCAG GCGCCGTCCA AGGCTCAGGG CCACAGGGCT
ATCGGCACAA TCGAAAAGAT CGAGCCCGGC AGCGTGACGC TGAGGCATGG GCCGGTCCCG
TCGGCGAGTT GGCCCGCAAT GACGATGCGC TTCCGGCTTG CCGATCCTGC AACGGTGCGC
GGGTTCAAAC CCGGCGACAA GGTGAACTTC ACCTTCGACC AGCCTGCGCA AGGCCCGACC
GTCCGCTCGA TCACGCGCGA GAACGGCCGA TGA
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| Protein sequence | MKHALSARAR LLLAAAAIAL VGGAVGYGVA SLSGTGPAAE RTEGDRKVLY WYDPMYPNQH
FDKPGKSPFM DMELVPKYAD EATSEAGVRI DPALVQNLGV RTAEVRRGTL GGGLSATGVI
GYNEREIAIV QPRAGGFVQR TYGRAPDDVI EAGAPLVDLL VPDWGGAQAE FLAVLRTGDR
ALASAARQRL VLLGMPQSTI AAVERSGRQR NVITINSPIG GTIKSLGVRQ GMSVMAGQTL
AEVNGLGTVW LDAAVPEAMA GRLRPDMPVT ATLAAYPGES FAGRIRAILP QAETESRTIT
ARVEIPNRGG RLRPGMFATV SFAGEQRPAL LVPSEALIRT GKRTLVMLAL DKGRYQPAEV
RTGMEADGQT EVLAGLAEGE KVVTSGQFLI DSEASLSAMQ ARPIAGGSPQ APSKAQGHRA
IGTIEKIEPG SVTLRHGPVP SASWPAMTMR FRLADPATVR GFKPGDKVNF TFDQPAQGPT
VRSITRENGR
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