Gene Sala_1951 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1951 
Symbol 
ID4080500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp2056672 
End bp2057358 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content67% 
IMG OID638010328 
Productouter membrane chaperone Skp (OmpH) 
Protein accessionYP_616996 
Protein GI103487435 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.273246 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC TTCTTGCCGC TTCCGCGCTG GCGATCGCCG CGCTGTCGGT CTCACCCATC 
CTGTCGGCCC CGGCCATTGC GCAGGCGAAG GGCGTGGCGG TCGCCGACGT GCGCGTCGCC
GCGGCGCGGT CGAACGCCTT CCGCACCGCT TCGCAGCAGA TCGAGACGAC CTACAAGGCG
CAGATCGACC AGCAGCAATC GCGCGGCCAG ACGCTGCAGG CCGAAATCAA CGTGCTGATC
GCGAAGTATA ATGAAGAGGC GCGAAAGACG CCGCAGAACC AGGCCGCGCT GCAGGCGGCG
GCCAAGGCCG TGCAGGACAA GCGTCAGGCC GCGCAGGCCG AACTCGGCCA GATCAGCGCG
CCCGTCGACC TTGCCATCGC CTATGTCGAG GATCAGATCA GCGTCCGCAT GAACGAGGCG
ATCAAGGCGG CGATGACCGC GAAGAAGGTC GACCTGCTGC TCAATCCCGA CGCGGTGCTC
GCGCGCGAAA ATAATGTCGA CATCACCGAG GCGGTCGTGA CCGAACTCAA CCGCATTCTG
CCCAATGTGT CCATCGCGGT TCCCGCGGGC TATCAGCCGG GCCAGCTCGT CCAGCAGCGC
AACCAGCAGC TGATGGACGC CGCGCGCGCG GCGCAGCCCG GTGCGGCGGC TCCGGCGCCG
ACCGGCAACC AGCCGACGAC GCGCTAA
 
Protein sequence
MKKLLAASAL AIAALSVSPI LSAPAIAQAK GVAVADVRVA AARSNAFRTA SQQIETTYKA 
QIDQQQSRGQ TLQAEINVLI AKYNEEARKT PQNQAALQAA AKAVQDKRQA AQAELGQISA
PVDLAIAYVE DQISVRMNEA IKAAMTAKKV DLLLNPDAVL ARENNVDITE AVVTELNRIL
PNVSIAVPAG YQPGQLVQQR NQQLMDAARA AQPGAAAPAP TGNQPTTR