| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1845 |
|---|
| Symbol | |
|---|
| ID | 4082023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1939779 |
|---|
| End bp | 1941047 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638010220 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_616890 |
|---|
| Protein GI | 103487329 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.360147 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCGTTG ATCCCCCCTC CAGACGCGCT TTGCTCACCG GCCTCGCCGC GCTGCCCGTT
GCGGCGAGCG CGGCGGCGGC CGAGCGCAAG GAGCGCCGAT CGAAAAAGCG CAAAGCGCCG
CGACCAAAGG TCCAGCATGT CGACGTCGCA ATCATCGGCG CAGGCGTCTT CGGCGCGTGG
ACCGCGTGGC ACCTTGTCCG CGCCGGGAAG AGTGTGCGGC TGTTCGACGC CTATGGCGCG
GGCAACGCGC GCTCCTCCTC CGGCGGGGAA AGCCGCGTGA TCCGAATGGG TTATGGTGCG
GACAGCCTTT ATTCGCAGAT GGCACGCGAA TCGCTGCCCT ATTGGAAGGC CTTATCCGAC
ACCGCCAGCG CGCCGATCTT TCACAACACC GGCGTGCTGT GGTTTGCGCC GCAGGGCGAA
GCCTATACCG CCCAGTCGCT GGCGTGGTTA CAAGCCAACC GCGTCGACCA CGAGCATGGC
GACGTCCGCT GGCTCCAGAC CAAATATCGC CAGATCCAAT TCTATCAGGG CGAAACGGGC
ATCCTCGAAA CCGAGGCGGG CGCGCTGATC GCCGCGCGCG GGGTGCAGGA AGTGACCGCC
GATGCGGGGG TGGAGGTCGA GCGCGTCGTC ATGCCCGCAC CGCTTTTTTC CAAGCGGGTC
AAGCGTCACG CGCTTCCCGA CGGCGGCACC GCCGACCATC TCGTCTATTG CGCGGGGCCG
TGGCTCGCTG AAATCTTCCC GCAGCAATTG ACGGGACGGA TCGTCGCGAC GCGGCAGGAG
GTCTATCATT TCGGCGCGCC GCAGGGCGAC ACGCGCTTCG CCCCGCCTGA ACTGCCCGTC
TGGGCCGATT TCAACAACGG CCGCATCGTC TATGGCATCC CCGACCTTGA GGGGGCGGGG
TTCAAGATCG CTTTCGACAC GCACGGCCCG GTGATCGACC CCGACACGAT GGAGCGCGAG
CCGACCCCCG CGGGAATCGC CGCGGCGCGC GCCTATGTCG CGCGGCGCTT TCCCGGCCTT
GCGGGGGCGC CGCTGATCGG CGCGCGCGTC TGCCAATATG AGAACAGCGC GAACGGCGAT
TATCTGCTCG ACCGCTTTCC GGGGCAGGAG CGCGTGTGGC TCGTCGGCGC CGGGTCGGGG
CACGGGTTCA AGAATGGCCC CGCGGTCGGC AAGCGCGTCG CGGCGCATAT TCTAGACAAG
GATCTGGCCA TCGAACCGCG TTTCAGTTTC GCGAGCAAGG GCACGGTGGC GGGCCGGACG
GTGTTCTGA
|
|---|
| Protein sequence | MAVDPPSRRA LLTGLAALPV AASAAAAERK ERRSKKRKAP RPKVQHVDVA IIGAGVFGAW
TAWHLVRAGK SVRLFDAYGA GNARSSSGGE SRVIRMGYGA DSLYSQMARE SLPYWKALSD
TASAPIFHNT GVLWFAPQGE AYTAQSLAWL QANRVDHEHG DVRWLQTKYR QIQFYQGETG
ILETEAGALI AARGVQEVTA DAGVEVERVV MPAPLFSKRV KRHALPDGGT ADHLVYCAGP
WLAEIFPQQL TGRIVATRQE VYHFGAPQGD TRFAPPELPV WADFNNGRIV YGIPDLEGAG
FKIAFDTHGP VIDPDTMERE PTPAGIAAAR AYVARRFPGL AGAPLIGARV CQYENSANGD
YLLDRFPGQE RVWLVGAGSG HGFKNGPAVG KRVAAHILDK DLAIEPRFSF ASKGTVAGRT
VF
|
|---|
| |