| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1653 |
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| Symbol | |
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| ID | 4080961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1735543 |
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| End bp | 1739127 |
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| Gene Length | 3585 bp |
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| Protein Length | 1194 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 638010026 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_616699 |
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| Protein GI | 103487138 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGAA GCGCCGCCGA CATTCTTGCC GCGATCGCAT CGGCCGCGGC GCCGCTGACG
CTGGCGCGCG CCGCCGACGG TTTCCTGCCG CTGCTGCTCG CCGACCTCGC GCGAGCGAGC
GACAAGAGGC TGGTCTATGT CGCGACCGAC GATGCCGCGA TGCAGGCGAT CGCCGACGCC
GCGCCCTTCT TTGCCCCCGA CCTCACCGTC CATCGCTTCC CGGCGTGGGA CTGCCTGCCG
TACGACCGCG CGGGGCCTTC GATGCGCGTC AGCGCCGACC GGCTGGCGAC GCTGTCGGCG
TTGCAGGCGG CGCCCAGGCG CGGCGAACTG ATCCTGACCA CCGTCGCCGC GATCACGCAG
CGCACGCTCA CCCCCTTCCG CATCCGCCAG CTCGCGACGA CGCTCGCCGC AGGCCAGCGG
ATTGACCGCG ACGCGCTCGC CGAGCTGCTC GTCGCCAACG GCTTCAGCCG CGTCGACACC
GTCGCCGACC AGGGCGAGTT CGCGGTGCGC GGCGGCCTGC TCGACCTGTT TCCGGCGGGC
GAAGAGACCG GGCTGCGCGT CGATTTTTTC GGCGACGAGA TCGAAAGCAT CCGCCGCTTC
GACCCCGCCG ACCAGCGCAG CCTGGGGGCC GCCAAGGCGC TGCAACTTCT CCCCGCATCC
GAAACCCTGC TCGACGAGGC GACGATCAAG CGGTTTCGCT CGGCCTATCG CGAATTGTTC
GGCGCGCAGG CGACGGGCGA CCCGCTCTAT CAGGCGGTCA GCGACGGGCG GCGGCAAGCG
GGCATGGATC ATTGGCTGCC GCTGTTCGAG GAGCGGATGG CGACGCTGTT CGACCATATC
GACCCCGCGA CCCCGGTGCT GCGCGGCCAC CGCACCGACG CAACCGCCGA AACGCGCTTC
GCCGCGATCG CCGACTATCA TGCCAACCGC GTCGCCGCCG AACGCGAATC ACCCGGCAGC
TACCGCCCGC TCGCGCCTGA GGCGCTGTAT CTGACCGAAG CCGAATGGAG CGGGGCGGAG
CAAGACCGTC CGGTTCATAT CGTCACCGCC TTCGACGTTC CGCCCGCGGC AACGGTCGTC
GACCTCGAAA CTTTCGCGGC GCGCGATTTC ACCCCCGAAC GCACCGCCGA CCTCAATGTT
TACGACAAGG TCGCCGACCA TCTGTCGGAC GAACGCCGCA AGGGACGGCG CACAATCATC
GCCAGCTATT CGGGCGGTGC GCGCGAGCGA CTTTCGGGAC TGCTGCGCGA CCATGGCGTG
ACCTCGCTGG TACAGGTCGA CACCTGGCAA GAGGCGTTGG GTTCAAGTTC CGCTCGTGTC
GAGCGAAGTC GAGACACCCC GCAGGAAAGC GCTGCCCCGA CGGGTGTCTC GACTTCGCTC
GACACGAACG GGAATAAAGG TGCGGCGGGA ACGGGCACGG TGGCGATGGT CGTCCTCCCC
CTTGATCACG GCTTCGCCTC CGACGCGATC AGCCTGCTCA CCGAACAGGA CATATTGGGC
GAACGCCTCG TCCGCCGCCA GAAACGCCGC AAAAGCGCCG ACGCCTTCCT CGCCGAACTG
GCGACGCTCA GCGTCGGCGA TCTGGTGGTT CATCTCGACC ATGGCATCGG CCGCTATGAG
GGACTGACCT CGATCCCGGT CGGGAACAGC CCGCACGATT GCGTCGCGCT GACCTATGCC
GGCGGTGACA AGCTCTACGT TCCCGTCGAA AATCTCGACG TCCTCTCGCG CTATGGCGGC
GAAAGCGACG GCGTCGCGCT CGACAAATTG GGCGGCGAGG CGTGGCAGCG GCGCAAGGCG
CGGATGAAGG AGCGGATCCG CGAGATTGCG GGCGAACTGC TCGCCACCGC GGCGCAGCGC
GCACTCCGCC CCGGCGAGAT CCTCACGCAG GATGCCGCCT ACCCCGCCTT CGCCGACCGC
TTCCCCTATC AGGAAACCGA CGATCAGGAC CGCGCCATCG GCGACGTGCT CGCCGACATG
GCGTCGGGGC GACCGATGGA CCGGCTGGTG TGCGGCGACG TCGGGTTCGG CAAGACCGAG
GTGGCGCTGC GCCCGGCGTT TGTGGCCGCA ATGGCGGGCG TTCAGGTCGC GGTGGTGGTG
CCGACGACCC TGCTCGCGCG CCAGCATTAC AGCAATTTTG TCGACCGTTT CAAAGGCTTT
CCGATCCATA TCGGTCGCCT GTCGCGCCTT GTCCCCGCCG CCGAGGCGCA AAAGACCCGC
GAAGGCCTGG CGAGCGGCCA GATCGACATC GTCGTCGGCA CCCATGCGGT GATCGCCAAA
TCGGTCGAGT TCAAGAATCT CGGCCTCGTC ATCGTCGACG AGGAACAGCG CTTCGGCGTC
GTCCACAAGG AACGGCTGAA GCAACTCAAG GCCGATGTCC ACGTCCTCAC CCTCACCGCG
ACGCCGATCC CGCGCACCTT GCAAATGGCG ATGTCGGGCT TGCGCGAACT CAGCGTGATC
CAGACGCCGC CAGTCGACCG CCTCGCGGTT CGCACCTATG TGGCGCCCTG GGATCCGGTC
GTGATCCGCG AGGCGCTGCT GCGCGAACAC GATCGCGGCG GGCAGAGCTT CTTCGTCACC
CCGCGCATCA AGGACTTGCC CGACATCGAG GAATATCTGC GCACCCGCGT TCCCGAGATC
AAATATGTCG TCGCGCACGG TCAGATGGGC GCACAGGAGG TCGAAGAGCG GATGAGCGCC
TTTTACGACC GCAAATATGA CGTGCTCGTC TCGACCACCA TCGTCGAATC GGGGCTCGAC
ATTCCGAGCG CCAACACGTT GATCGTTCAC CGTGCCGACC GCTTCGGCCT CGCCCAGCTT
TATCAGCTGC GCGGCCGCGT CGGGCGGTCA AAAACGCGCG CCTATGCCTA TCTCACGACG
CCCGACGGCG GCGCGATCAC CGATACGGCG GAAAAGCGGC TGAAGCTGCT CGGCGATCTC
GACACGCTCG GCGCGGGCTT CCAGCTCGCG AGCCACGACC TCGACATTCG CGGCGCGGGG
AACCTCGTCG GCGACGAGCA GTCGGGGCAT ATCCGCGAGG TCGGCTTCGA ACTTTACCAG
TCGATGCTCG AGGAAGCGAT CCTTGCCGCC AAGGCCGAGA ATGCCGGCGC CGCGCCGCCG
CGGGAGGCGC TCTCGCCCGT CATCACCATC GACGCGCCGA TCCTCATCCC CGAGGATTAT
GTTCCCGACC TGCCGCTCCG CATGGCGCTC TATCGCCGCC TCAACGAAGC CGAGGACCGC
GCCGCGCTCG ACGCCTTCGC CGCCGAGATG ATCGACCGCT TCGGCCCGCT GCCCCCCCAA
ACCGCGAACC TGGTGCAGCT GATGGAGATC AAGGCGAACG CCAGGCTCGC GGGCATCGCC
AAGCTCGACG TCGGCACCAG GGGCGCGCTC GTCAGCTTCC ACGGCGACCA GTTCGCCAAC
GTCCCCGGCC TGATCGCCTA TGTCGAACGG CTGAAAGGCC GCGCGCGGCT GCGTCCCGAC
AACAAGCTGT CGGTCAGCGG CGACTGGGCC AGCACCGGCG CGCGGCTGAA CGGCGCCCTG
CAATTGTCTA AGGGGTTGGG AAAGCTGGCG AAGCAGCTAT CATAG
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| Protein sequence | MTRSAADILA AIASAAAPLT LARAADGFLP LLLADLARAS DKRLVYVATD DAAMQAIADA
APFFAPDLTV HRFPAWDCLP YDRAGPSMRV SADRLATLSA LQAAPRRGEL ILTTVAAITQ
RTLTPFRIRQ LATTLAAGQR IDRDALAELL VANGFSRVDT VADQGEFAVR GGLLDLFPAG
EETGLRVDFF GDEIESIRRF DPADQRSLGA AKALQLLPAS ETLLDEATIK RFRSAYRELF
GAQATGDPLY QAVSDGRRQA GMDHWLPLFE ERMATLFDHI DPATPVLRGH RTDATAETRF
AAIADYHANR VAAERESPGS YRPLAPEALY LTEAEWSGAE QDRPVHIVTA FDVPPAATVV
DLETFAARDF TPERTADLNV YDKVADHLSD ERRKGRRTII ASYSGGARER LSGLLRDHGV
TSLVQVDTWQ EALGSSSARV ERSRDTPQES AAPTGVSTSL DTNGNKGAAG TGTVAMVVLP
LDHGFASDAI SLLTEQDILG ERLVRRQKRR KSADAFLAEL ATLSVGDLVV HLDHGIGRYE
GLTSIPVGNS PHDCVALTYA GGDKLYVPVE NLDVLSRYGG ESDGVALDKL GGEAWQRRKA
RMKERIREIA GELLATAAQR ALRPGEILTQ DAAYPAFADR FPYQETDDQD RAIGDVLADM
ASGRPMDRLV CGDVGFGKTE VALRPAFVAA MAGVQVAVVV PTTLLARQHY SNFVDRFKGF
PIHIGRLSRL VPAAEAQKTR EGLASGQIDI VVGTHAVIAK SVEFKNLGLV IVDEEQRFGV
VHKERLKQLK ADVHVLTLTA TPIPRTLQMA MSGLRELSVI QTPPVDRLAV RTYVAPWDPV
VIREALLREH DRGGQSFFVT PRIKDLPDIE EYLRTRVPEI KYVVAHGQMG AQEVEERMSA
FYDRKYDVLV STTIVESGLD IPSANTLIVH RADRFGLAQL YQLRGRVGRS KTRAYAYLTT
PDGGAITDTA EKRLKLLGDL DTLGAGFQLA SHDLDIRGAG NLVGDEQSGH IREVGFELYQ
SMLEEAILAA KAENAGAAPP REALSPVITI DAPILIPEDY VPDLPLRMAL YRRLNEAEDR
AALDAFAAEM IDRFGPLPPQ TANLVQLMEI KANARLAGIA KLDVGTRGAL VSFHGDQFAN
VPGLIAYVER LKGRARLRPD NKLSVSGDWA STGARLNGAL QLSKGLGKLA KQLS
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