| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1633 |
|---|
| Symbol | |
|---|
| ID | 4080711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1714784 |
|---|
| End bp | 1715875 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010006 |
|---|
| Product | acyl-CoA dehydrogenase-like protein |
|---|
| Protein accession | YP_616679 |
|---|
| Protein GI | 103487118 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0193682 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.810122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTCG ACCTCAGCGA TGAACAGAAA ATGCTCGGCG AGCAAGCCCG CGCGCTGCTT
GCCGACCTCT CGCCCTTCGA TCGCTTGCGC CAGCTGATCG ATTCGGGCGC GGATTGGGAC
GAGCCCCTGT GGCGCGCGCT CGCCGAAATG GGGTTCCTGG GGGCGGCGAT CCCCGAAGAG
CATGGGGGAC TTGGCCTCGG CGCACTCGAC CTCGGCGTTA TCATGGAGGC GCTGGGTGCC
GCCAATGCCG CGGTGCCGTT CATGAGTTCG ATCATCCTCG GAGCCGAAGC GATCCGGCTC
GCGGGGAGCG ATGCGCAGAA AGCGGCCTGG CTGCCACGGC TCGCGTCGGG CGAGGCGGTG
GCGACCTTCG CTTATGCCGA GGGGCCAGGG CCGGTCTTTG CGACGGGTGC GCGACTCGAA
GGCGGCAAGC TGTCGGGAAG CAAGTTCCCC GTCGCCGATG CGGGGATCGC CGATATTGCG
GTGGTGCTCG TCGCGGGGGG CGATCTCGCG CTCGTCGAGC TCGATCAGCC GGGGGTGACG
CGGACTAAGC TCGACAGCTT CGACCAGCTC CGCCCGCACT ATCGCCTCGA CTTCGATGCG
GCGATGGCCG ATCCGATGCC GGGCCGCGGA AAGCTCGACC GGTTGATCGA TCAGGCCGCG
GTCCAGGCCG CATTTGAAGC TGCGGGCGCT GCCGAAGCCT GTCTCTACAT GGCCCGCGAT
TATGCCTTGG AGCGCCAGAT TTTCGGTCGC TCGCTCGCCA GTTTCCAGGC GATCAAACAC
AAGCTGGCCG ATGTGGCGGT GGCGACCGAG CTTGCACGGT CGAACGCCTA TTTCGGTGGC
TGGGCGGCTC AATCCTCACC CGATGACCTG CCTGCGGCGG CGGCGGCGGC GCGGCTTTCG
GGCATCAAAT GTTTCGAGAT GGCGGCCCGC GAGAATCTTC AGGTGCACGG CGGCATCGGA
TATACGTTCG AAGCCAACTG TCACTTCTAT TACCGCCGCG AACGGATGCT TGCGGTGCAT
CTCGGCAATC GGGGTTTTTG GGCAAACCGG CTGCTCGCCG CGCAGCCCGG GCGCCAGGGT
CAGGCGGCCT GA
|
|---|
| Protein sequence | MNFDLSDEQK MLGEQARALL ADLSPFDRLR QLIDSGADWD EPLWRALAEM GFLGAAIPEE
HGGLGLGALD LGVIMEALGA ANAAVPFMSS IILGAEAIRL AGSDAQKAAW LPRLASGEAV
ATFAYAEGPG PVFATGARLE GGKLSGSKFP VADAGIADIA VVLVAGGDLA LVELDQPGVT
RTKLDSFDQL RPHYRLDFDA AMADPMPGRG KLDRLIDQAA VQAAFEAAGA AEACLYMARD
YALERQIFGR SLASFQAIKH KLADVAVATE LARSNAYFGG WAAQSSPDDL PAAAAAARLS
GIKCFEMAAR ENLQVHGGIG YTFEANCHFY YRRERMLAVH LGNRGFWANR LLAAQPGRQG
QAA
|
|---|
| |