| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1483 |
|---|
| Symbol | |
|---|
| ID | 4081255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1540612 |
|---|
| End bp | 1541913 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 638009848 |
|---|
| Product | RNA polymerase ECF-subfamily sigma factor |
|---|
| Protein accession | YP_616529 |
|---|
| Protein GI | 103486968 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.860065 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCCT CGTCGGTGAA CTTCGCGGAC AAGACGGACA TGGCAATGGA AGACATCCAT
AGGGCAATCG AGGCGGTTTT CCGCATCGAG CGGGCGAGGT TGATTGCCGG TCTTGCCCGC
CTGACCCGCG ACGTCGACCG CGCCGAGGAA CTGGCGCAGG ATGCGCTGCT CGTCGCGCTG
ACCGAGTGGC CGAGGGGCGG CGTTCCGGAC AATCCCGGCG CGTGGCTCAT GACTGCGGCG
AAGCGGCGCG CGATCGACGG CGTTCGCCAC CATGCGATGC GGACGCGCAA ACATGCCGAG
ATTGCCCGCG AACTGGACGA GGAGCGCGAC ATGAGCGCGG AGGCCGTCGA AGCGGCGCTG
GACGATCCGC TGGGCGACGA ACTGCTCGGG CTGATCTTTG CCGCCTGCCA CCCCGTGATT
TCGCCCGACG GACGCGCCGC GCTGACGCTA CGGCTCGTTG GCGGGCTGAC GGTCGAGGAG
ATTGCGCGGG CTTTCCTGTC GAACGAGGCG ACGATCGCGG CGCGGATCAC CCGCGCCAAG
AAAGCGATCG CCAAGGCGGG CGTGGCGTTC GAGGTGCCGC GCGGCGCCGA GCTGGCGGCG
CGCCTGCCGT CGGTGCTGGA AGTCGTCTAT CTGATTTTCA ACGAAGGCTA TGCCGCCACC
GCGGGACCGG CGCTGGTGCG GCCGCCGCTC TGCGCCGAGG CGCTGCGACT GGGGCGCATC
CTCGCCGCGC TGATGCCCGA TGAGCCGGAA GTGCTGGGCC TGTTGGCGCT GATGGAGATT
CAGGCGTCGC GACTGGCGGC GCGCGCCGGG CCGGACGGCA GGTTCGTGCC GCTGACCGAA
CATAACCGGG CGCGCTGGGA CCAACTGCTC ATCCGCCGCG GGTTGAACGC GCTGGCGCGG
GTCGAGGCGC TGGGAGGCGC GGGCGGACCC TATGCGTTGC AGGCGGCGCT CGCGGCCTGT
CATGCCAGGG CGCGGCGCGC CGAGGACACC GACTGGCGGC GGATCGCCGC GCTTTATGAT
CGGTTGGGAC AGGTGATGCC ATCGCCGGTG GTCGAACTCA ACCGGGCGAT CGCGCACAGC
ATGGCGTTCG GTCCCGAAGC GGGGCTGGCG CTGGTTGATA CGCTCGCCGA CGCAGCGGTG
CTCCGCAACT ATGCCCCGCT ACCCGCGGCG CGCGGCGATT TCCTGCTGCG CGCCGGTCGC
AAAGCCGAGG CCAAAGGCGC GTTCGAGGCG GCGGCGGCGC TGTCGGCCAA TGAGCGTGAG
CGCGAATGGC TGCTCGCACG GGCGGCCGCC TGCGCCAACT AG
|
|---|
| Protein sequence | MLASSVNFAD KTDMAMEDIH RAIEAVFRIE RARLIAGLAR LTRDVDRAEE LAQDALLVAL
TEWPRGGVPD NPGAWLMTAA KRRAIDGVRH HAMRTRKHAE IARELDEERD MSAEAVEAAL
DDPLGDELLG LIFAACHPVI SPDGRAALTL RLVGGLTVEE IARAFLSNEA TIAARITRAK
KAIAKAGVAF EVPRGAELAA RLPSVLEVVY LIFNEGYAAT AGPALVRPPL CAEALRLGRI
LAALMPDEPE VLGLLALMEI QASRLAARAG PDGRFVPLTE HNRARWDQLL IRRGLNALAR
VEALGGAGGP YALQAALAAC HARARRAEDT DWRRIAALYD RLGQVMPSPV VELNRAIAHS
MAFGPEAGLA LVDTLADAAV LRNYAPLPAA RGDFLLRAGR KAEAKGAFEA AAALSANERE
REWLLARAAA CAN
|
|---|
| |