| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1449 |
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| Symbol | |
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| ID | 4081531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1496413 |
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| End bp | 1499577 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638009814 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_616495 |
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| Protein GI | 103486934 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.819785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCCC GCTTTTTCAT CGACCGGCCC ATTTTTTCCT GGGTCATCGC CATCGGCATC
CTGCTCGCCG GGATCATCGC GCTGCGTGGG CTGCCCGTCG AGCAATATCC GTCGGTGGCG
CCGCCGTCAC TGACCATCGG CGTCACCTAT CCGGGCGCAG ATGCGAGGAC GCTGGAGCAG
AATGTCACGC AGGTTATCGA GCAGGAACTG AACGGGGTCG AGGGCTTCCT CTACATGGCC
TCGACCAGCG AATCCAACGG CACCGCATCG ATCACGCTGA CCTTTGAGGC GGGGACCGAC
ATCGACAATG CGCAGATGGA GGTACAGAAC CGTCTGCGCC GCGTCGAACA GCGGCTGCCC
GAAGATGTGC GGCGCCAGGG CATTTCGGTG ACCGAGGCCA ATTCGGGCTT CCTCCTGATC
GTCGCGATCA CGTCGAAGAG CGGCAACACG GACCCGATGG AGGTCAACAA TTTCGCCAAC
ACGCGCGTGC TCGACGAACT GCGCCGCGTG AATGGCGTCG GCAATGTCCA GGCCTTTGCC
CCCGAATATG CGATGCGCGT CTGGCTCGAT CCGCAGAAGC TTGCCTCCTA TGGCCTCTCG
GCTGCCGAAG CGCTCGCGGC GGTGCAGGAG CAGAATAGCC AGACGCCGGG CGGCCAATTG
GGCGACCAGC CGATCGCGAA GGGGGCGCAG ATCAACGCCG TCATCACGAC GCAGGGCCGC
TTCACCAAGC CCGAACAGTT CGAAAGCATC ATCCTGCGCG CCAACCCCGA CGGGTCGGCG
GTGACGCTGG CCGACGTCGG CCGCGTCGAG CTTGGCGCGG CAAGCTATCT GTTCTCGTCC
GAACTCAATG GCAAGCCAAT GGCGGGCCTC GCGGTCCAGC TGACCCCCGG CGCCAATGCG
CTGTCGACCG CCGAGGGCGT GCGCGCGCAG ATGGCGGAGC TGGAAAAAGG CTTTCCGCCC
GACATCAGCT GGTCGATCCC CTATGACACG ACGCCCTTCG TCGAGCTGTC GATCGAGGAA
GTGGTCAAGA CGCTGGTCGA GGCGATGATC CTCGTCTTCC TCGTCATGTT CCTGTTCCTG
CAGAACTGGC GCGCGACGGT GATCCCGACG ATCGTCGTGC CGATCGCACT CGCAGGGGCG
TGCCTTGGCC TGTGGATGTT CGGATTCTCG ATCAACGTGT TGACGCTTTT CGGCATGGTG
CTGGCGATCG GCATTCTCGT CGACGATGCG ATCGTCGTGA TCGAAAATGT CGAGCGCATC
ATGAATGAAG AGCATCTGCC GCCCTATGAA GCGACGGTGA AGGCGATGGG GCAGATCACC
AGCGCGATCA TCGGCATCAC GCTGGTGCTG ATCGCGGTGT TCATCCCGAT GGCGTTCTTC
CCCGGCTCGA CGGGCGGCAT CTATCGCCAA TTCTCGATGA CGCTCGCGAT CTCGATCGCC
TTCTCGGCGC TGCTCGCTCT CACGCTCACG CCGGCGCTCT GCGCGACCTT GCTGAAGCCG
CACGACCAGA CCAGGCGCAC CGGGCCGGTC GGCGTCTTCT TCGATCGCTT CTTCGACCGC
TTCAACGGCT GGTTCGGGCG CACGACCGAT CGCTATCAGG GCGGCGTGGG CAAGATGCTC
GCCGCGCCGC TGCGCTGGCT GGGCGTATTT GTGGCGATGG TCGCGATAAC CGCGCTGCTC
TTTACCCGCC TCCCCGGATC CTTCCTGCCG CAGGAGGATC AGGGCTATCT GATCACGGTC
ATTCAGGCCC CGCCGGGCGC GACGACGCAG CGCACCAACG AAGCGACGAA GCAGGTCAAG
GCCTTCTTCG CCGAACAGCC GCAGGTCGCG AACATCGTGC TCGTCAACGG CTTCAGCTTT
TTCGGCCAGG GTCAGGCGAA CGCGATCATG TTCACGCCGC TGAAACCCTG GGACGAACGC
ACCGGCGAAG GCGACAGCGC CGACGCGATC GCCGGCAGGG CGATGGGCAC GCTGATGGGC
ATCAAGGAAG CCTTTGCCTT TTCGCTGAGC CCGCCGTCGA TCCCCGAACT CGGCACGTCG
AGCGGCTTTA CGTTCAAATT GCAGGATCGC GGCGCAAACG GGCGCGAGGC GCTGGTCGCG
GCACGCAACC AGATGCTCGG CGGCGCGATG CAGAGCAAGC TGCTCGCCAA TGTCCGCCCC
GAAGGGCAGG AAGACGCGCC GGTGCTCAAG CTCGACATCG ACCGCATCCA GGCGCGCGCG
CTCGGCCTGT CGATCGGCGA GGTCAATGCA ACGCTCGCGA TCAGTTTCGG TAGCGCCTAT
GCCAATGACT TCACGCGCGA GGGCCGCGTG CTGCGCGTGC TGCTCCAGGC CGACGCGGCG
AACCGCATGA CGCCGCAGGA TGTGCTCGAC CTGCGCGTGC GCAGCGCGAC GGGCGACATG
GTGCCCTTTG GATCGTTCAG CAAGGCCGAA TGGTCGGCCG AACCGCCGCA GCTTCAACGC
TATAACGGCT ATCCGGCAAT GACGATTTCG GGGGAGCCCG CGCCCGGCCA GTCGACCGGC
GAGGCGATGG CGGAAATGGA GCGGCTGGCG GAGCAATTGC CGCCGGGATT CGCCTATGAA
TGGACCGGCA TTTCCTATGA AGAGAAGCAG TCGGCCGGTC AGATCGGCAT GTTGCTGGGT
CTGTCACTCG TCGTCGTCTT CCTGCTGCTC GCCGCGCTCT ATGAAAGCTG GTCGGTGCCG
GTGGCGGTGC TGCTCGTCGT TCCGCTCGGC GTGCTCGGCG CGGTGCTCTT TTCGATGTTC
CGCGGGCTGT CGGCCGACAT TTATTTCAAC GTCGGCCTGA TCACGATCAT CGGGCTTGCC
GCCAAGAATG CGATCCTGAT CGTCGAGTTC GCGATCGAGC AGGAGGCCGA GGGCAAATCG
ACGCTCGACG CGGTGATGGA AGCGGTGAAG CTGCGCCTGC GGCCGATCAT CATGACCAGT
CTGGCGTTCA TCCTTGGCAT GGTGCCGCTC GTTATCGCAA CGGGCGCGGG CGCCGCCAGC
CGCATCGCGG TTGGATCGGG CGTGATGGGC GGGATGATCG CCGCGACCTT GCTCGGCATC
TTCTTCATCC CGCTGTTCTA CCTGTCGGTG CGCAAATGGC TGAGCCGCAA ACGCCCCCCC
GCCCCCACCG AGAAAGGCCA CCATGAGGAG CCCGGTCATG CGTAA
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| Protein sequence | MTPRFFIDRP IFSWVIAIGI LLAGIIALRG LPVEQYPSVA PPSLTIGVTY PGADARTLEQ
NVTQVIEQEL NGVEGFLYMA STSESNGTAS ITLTFEAGTD IDNAQMEVQN RLRRVEQRLP
EDVRRQGISV TEANSGFLLI VAITSKSGNT DPMEVNNFAN TRVLDELRRV NGVGNVQAFA
PEYAMRVWLD PQKLASYGLS AAEALAAVQE QNSQTPGGQL GDQPIAKGAQ INAVITTQGR
FTKPEQFESI ILRANPDGSA VTLADVGRVE LGAASYLFSS ELNGKPMAGL AVQLTPGANA
LSTAEGVRAQ MAELEKGFPP DISWSIPYDT TPFVELSIEE VVKTLVEAMI LVFLVMFLFL
QNWRATVIPT IVVPIALAGA CLGLWMFGFS INVLTLFGMV LAIGILVDDA IVVIENVERI
MNEEHLPPYE ATVKAMGQIT SAIIGITLVL IAVFIPMAFF PGSTGGIYRQ FSMTLAISIA
FSALLALTLT PALCATLLKP HDQTRRTGPV GVFFDRFFDR FNGWFGRTTD RYQGGVGKML
AAPLRWLGVF VAMVAITALL FTRLPGSFLP QEDQGYLITV IQAPPGATTQ RTNEATKQVK
AFFAEQPQVA NIVLVNGFSF FGQGQANAIM FTPLKPWDER TGEGDSADAI AGRAMGTLMG
IKEAFAFSLS PPSIPELGTS SGFTFKLQDR GANGREALVA ARNQMLGGAM QSKLLANVRP
EGQEDAPVLK LDIDRIQARA LGLSIGEVNA TLAISFGSAY ANDFTREGRV LRVLLQADAA
NRMTPQDVLD LRVRSATGDM VPFGSFSKAE WSAEPPQLQR YNGYPAMTIS GEPAPGQSTG
EAMAEMERLA EQLPPGFAYE WTGISYEEKQ SAGQIGMLLG LSLVVVFLLL AALYESWSVP
VAVLLVVPLG VLGAVLFSMF RGLSADIYFN VGLITIIGLA AKNAILIVEF AIEQEAEGKS
TLDAVMEAVK LRLRPIIMTS LAFILGMVPL VIATGAGAAS RIAVGSGVMG GMIAATLLGI
FFIPLFYLSV RKWLSRKRPP APTEKGHHEE PGHA
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