| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1289 |
|---|
| Symbol | |
|---|
| ID | 4082581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1347013 |
|---|
| End bp | 1348293 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638009651 |
|---|
| Product | tetratricopeptide TPR_2 |
|---|
| Protein accession | YP_616336 |
|---|
| Protein GI | 103486775 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGC GTTTCCGCTC GATGCCCGCA ACGGCGATGG CCGCCGTGCT GGGCTGCGCG
CTGATGACAA CCGCGACCCC CGCCGCGGCG CAGAAGAAGC CCAAGAAGGA AGAGGCCGCC
AAGGGCAAGT CGCTCAGCCC CAGCAAGGGT TTCGCCCCGG CGCTCAAAAA GATGACCGAC
GCGACCGCGG CCAAGGATGC CGCAGCGTTG CAGGCGGCCA TGGCTGAGGG GCAGGCGAGC
GCGACCTCGC CCGACGACCA ATATCTCCTC TCCTTCTATC AGTTGCAGCT CGGCATCCTG
AACAAGGACA CGGCGCTGCA GGGCCAGGGG CTCGACGGGA TGATTGATTC GGGGCTGACC
CCACCGGAAA ATCTCGCGAC CTATAACTTT TATTCGGGCA ATTTCGCTTA TGGCGCCAAA
AATTACGCCA AGGCGATCCA GCGCCTCGAA GCTGCCAAGG CTGCGGGTTC GACCGAGCCG
GCCCTGGCGG CGATCCTGAT GGACAGCTAT CTGAACGCGG GGCAGATCGA CCAGGGCTGG
GCGATCGCCA AGGCCGGCAT CGATGCGGCG CGTGCCGCCG GAACGAAGCC GTCAGAGGAT
CTTTATGTCC GTCCGGCGCA GGCTTTCCAG AAAGCCAACC GAACCAACGA GATGCTCGAC
GTTCTGACGA TGCGTGTCGA AGATTATCCC TCGCCCGCGA CATGGCGCAA TACGCTCTAT
ATCCTGTTGC AGCAGTCGGG TGGCGACAAG GAGCTCAACC TCGACATCCT GCGCCTGATG
CGCGCGACCA ATGCGATGAC TCAGCGCCCG GAGTATCTGG AATACTCGGC CCTTGCGGTC
GAGGCAGGCT ATCCGGGTGA AGCCATCGCC GTGATCCGTC AGGGGCAGAA TAACGGGGTG
ATTCCAAAGG GTGACACCCA TTTCGGCAAC ATTCTCGAAA CACAGACGCC TCGCGCGGCC
GCCGACGCCG CCGCGGTCGC CGCCGACGCG AACAAGGCCG CGACGCTGAA CAATCCCAAG
GCCGCGCGGT CGACCGCCGA TGTGCTGGTC GGAATCGGCC AGCCCGCGAA AGCGATCCCG
CTTTATGAAG CCGCGCTGAA GGCGGCGCCG AACGACGCGA TCGCGCAGTT CCGCCTGGGC
GTGGCGCAGG CGCTCGCCGG ACAGGTCGAT GCCGCCGCGG CGAGTTTTGC CAAGATCCAG
GGCAATCGGG CGCGATTGGC GCAGCTGTGG GCGGTGCGCG CCAAAACCGG TGCCGCACCC
GCGCCGGCCA CCGCCAGCTG A
|
|---|
| Protein sequence | MFKRFRSMPA TAMAAVLGCA LMTTATPAAA QKKPKKEEAA KGKSLSPSKG FAPALKKMTD
ATAAKDAAAL QAAMAEGQAS ATSPDDQYLL SFYQLQLGIL NKDTALQGQG LDGMIDSGLT
PPENLATYNF YSGNFAYGAK NYAKAIQRLE AAKAAGSTEP ALAAILMDSY LNAGQIDQGW
AIAKAGIDAA RAAGTKPSED LYVRPAQAFQ KANRTNEMLD VLTMRVEDYP SPATWRNTLY
ILLQQSGGDK ELNLDILRLM RATNAMTQRP EYLEYSALAV EAGYPGEAIA VIRQGQNNGV
IPKGDTHFGN ILETQTPRAA ADAAAVAADA NKAATLNNPK AARSTADVLV GIGQPAKAIP
LYEAALKAAP NDAIAQFRLG VAQALAGQVD AAAASFAKIQ GNRARLAQLW AVRAKTGAAP
APATAS
|
|---|
| |