| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1202 |
|---|
| Symbol | |
|---|
| ID | 4080697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1243095 |
|---|
| End bp | 1244096 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638009563 |
|---|
| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
|---|
| Protein accession | YP_616251 |
|---|
| Protein GI | 103486690 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATACAGC AAAGCCCCGA TCCTGCGCTC GCCCCGCTGC TCGACCCGAA CCGCGCCCCC
TCGCTCGCAG GGGTGGAACG CGCTGCGGCC AAGGTTGCTG CCTTGCTCCC GCAGACGCCG
CTGCTGCCGC TCGAGGTCGA CGGCCGCACC ATCTGGTGCA AAGCCGAATC GCTCCAGCCC
GTCGGCGCGT TCAAGATCCG CGGCGCGTGG CACCGGCTGA CCGACCTGAC GCCCGAACAG
GCGGCGGCGG GCGTGGTCGG TGTGTCCAGC GGCAATCATG CGCAGGGGGT CGCCTGGGCG
GCGAAGCGGC TCGGTATCCG CGCCACGATC GTCATGCCGG GCAACGCCCC CGCGATGAAA
CTCGCAGCGA CGCGCAGGCT GGGAGCGGAA GTCGTGCTCT ATGACCGCGT TACCGAATCG
CGCGATGCCG TCGCGGCAAA GCTGCTCGCC GAGCGCGGCG GGACGCTGGT TCATGCCTAT
GGTGATCCGT GGATCATCGA GGGGCAGGGG AGCGCGGGGA TCGAGGCGGC GATGCAGATG
CGCGCACGCG GGATCGACGG CCCCGACCGG ATCGTCGCCT GTTGCGGCGG CGGCGGGCTG
TCGGCCGGGC TGGCGCTCGC CTGCCCCGAC GCACAGGTGA TCGCCGTCGA GCCTGAGGGG
TGGGATGATG TGACGCGCAG TCTGGCCGCG GGAGAGATAC TGAGCGTCGA GGATATGTCC
TTTCCTACCG AATGCGACGC GCTCCAGACG CCCGAAACAT GGCCGATCAA CTTTGCGGTG
CTTCGGGCGC GCGGTGTCCG CGGGGTCGTC GTGACGCGCA GCGAAGTGCG CGACGCGATG
CGCCTCGCCT TTGAAAGGCT GCACCTGGTC ATCGAACCCG GCGGCGCGGC GGCGCTGGCG
GCAGTGCTGG CGGGCAAGGT GACGCCGACC GACGCGACGC TCGTCACCCT GTCAGGCGGC
AATGTCGATC CGCTGCAATT CGCCGAAATC ATCAGCGAAT AG
|
|---|
| Protein sequence | MIQQSPDPAL APLLDPNRAP SLAGVERAAA KVAALLPQTP LLPLEVDGRT IWCKAESLQP
VGAFKIRGAW HRLTDLTPEQ AAAGVVGVSS GNHAQGVAWA AKRLGIRATI VMPGNAPAMK
LAATRRLGAE VVLYDRVTES RDAVAAKLLA ERGGTLVHAY GDPWIIEGQG SAGIEAAMQM
RARGIDGPDR IVACCGGGGL SAGLALACPD AQVIAVEPEG WDDVTRSLAA GEILSVEDMS
FPTECDALQT PETWPINFAV LRARGVRGVV VTRSEVRDAM RLAFERLHLV IEPGGAAALA
AVLAGKVTPT DATLVTLSGG NVDPLQFAEI ISE
|
|---|
| |