| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1129 |
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| Symbol | |
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| ID | 4081489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 1167543 |
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| End bp | 1169024 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638009490 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_616178 |
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| Protein GI | 103486617 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0311226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.350222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGCA AAGCCAATTT CAAGGCGGCG GCTCTGGCGC GCACCCTCGC CATCGGCCTC
GTGGCAGCGA CGCTGATAGC GGCCCCGTCG CGACCCGTCG CGGCGCAGGC GGTACAGAAT
GCCAGCAGCA GCATCGACCT TTCGGTCGGT CGCGGTCGCC TGATCAGCTT GCCCGCCGCG
ATGAGTGACG TGTTCGTTGC CGACGACAAG GTCGCCGATG TGCAGGTCCG TTCGAGCCGC
CAGCTCTATG TCTTTGCCAA GGCGCCCGGC GAAACGAGCA TCTATGCCAC CGACGCCAGC
GGACGGGTCG TGTTCTCGAC CGTCGCGCGC GTCGGCAACA ATATCGAGAC GATCGACCAG
ATGCTGTCAT TGGCAATGCC CGAAGCAAGC ATTGCGGCGA ACACGATGAA CGGCTTTGTG
CTGCTCACCG GCACCGTCCG GTCGCCCGAC GATGCGGCCG AAGCCGAACG GCTGGTACAG
GCCTTTGTCG GCGATCAGAC CAAGGTGCTC TCGCGTCTGC GCACGGCGAC GCCGCTGCAG
GTCAATCTGC AGGTCCGTAT CGCCGAGGTG AACCGCTCGC TCGTCAAGGA GTTGAGCGGA
AACCTGTTGA CCCGCGACAC CGACGGCCCC CTTGGCAACG GTTTTCTGGG TGGGGTGTTC
GGCGGCCGCC AGGCGGGCAC GATCACGACC GACGCCAACG GCAATACCAT CTACTCCATC
ACGACTCCGC CCGGAACACG CAGCCTGGCC GGAGCGGGCC GCCTGTTCGG GCTCGACCTG
ATCGCTTCGC TCGACATCGG CGAGCGTTCG GGACTGGTGG CGACGCTGGC ACAGCCCAAT
CTCACGGCGA TTTCGGGCGA GACCGCCGAC TTCCTGGCGG GCGGCGAGTT TCCCGTGCCG
ATCCCCGGCA ATTTCGCGGG GACGACCATC GAGTATCGCA AATATGGCGT CAGCCTGGCC
TATACGCCGA CCGTGCTGTC GAACGGCCGC ATCAGCCTGC GCGTCCGTCC CGAAGTTTCG
GAGCTGTCGA CCGAAGGCGC GATCGAGATG CAGGGGTTTC AGATTCCCGC GCTCACGATC
CGCCGCGCCG AAACCACGGT CGAGCTGGGT TCGGGCGAAA GCTTCATGAT CGCCGGATTG
CTCAACAACC GTTCGATCGG CGCCATCGAC AAGATGCCGG GCCTCGGCGA CGTGCCGCTG
CTCGGCACAT TGTTCAAGTC GGACAGCTTC CGCCGCGGCG AGACCGAACT CGTCATCGTC
GTGACGCCCT ATCTGGTCGA ACCCGTCTCG GCGAACGACA TCAAGCTGCC GACCGATGCG
TTCCGCGATG CCGACGACTT GCAACGCCTG CTGCTCAACC AGACGAGCGA TGGCGTGACG
GGCGGCGACC GTCCGAAGCC ACGCCTCGAC TCCAATGTGG GTGATGCCGA CCGCCCGCGC
GGCGGCGGCA GCGACGCCTC GCCCGGTTTC AGCATCAAGT GA
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| Protein sequence | MNSKANFKAA ALARTLAIGL VAATLIAAPS RPVAAQAVQN ASSSIDLSVG RGRLISLPAA
MSDVFVADDK VADVQVRSSR QLYVFAKAPG ETSIYATDAS GRVVFSTVAR VGNNIETIDQ
MLSLAMPEAS IAANTMNGFV LLTGTVRSPD DAAEAERLVQ AFVGDQTKVL SRLRTATPLQ
VNLQVRIAEV NRSLVKELSG NLLTRDTDGP LGNGFLGGVF GGRQAGTITT DANGNTIYSI
TTPPGTRSLA GAGRLFGLDL IASLDIGERS GLVATLAQPN LTAISGETAD FLAGGEFPVP
IPGNFAGTTI EYRKYGVSLA YTPTVLSNGR ISLRVRPEVS ELSTEGAIEM QGFQIPALTI
RRAETTVELG SGESFMIAGL LNNRSIGAID KMPGLGDVPL LGTLFKSDSF RRGETELVIV
VTPYLVEPVS ANDIKLPTDA FRDADDLQRL LLNQTSDGVT GGDRPKPRLD SNVGDADRPR
GGGSDASPGF SIK
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