Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0987 |
Symbol | |
ID | 4081675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1013814 |
End bp | 1014449 |
Gene Length | 636 bp |
Protein Length | 211 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638009347 |
Product | rhomboid-like protein |
Protein accession | YP_616037 |
Protein GI | 103486476 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.769886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGCCGC AGGACGCGCC GCTGGTCACG GGCTATGCGC TCGCCTGCGT CATCCTGTTC GTCCTGCTCT GGATCACGGG CTTTCAGATC GAAGCGATCG TGCGCGCGGG CTTTATTCCC GCGCGCTTCG GCCAGGAATT GATCCTGCCG CCGGGAACGC TGGTGCCCTT TGTGCTGACG CCGCTGACGT CGGCCTTTCT GCACGGCGGG GTGCTCCACA TCGCCTTCAA CATGGTCGTG CTGCTGTTCA TCGGCCGCCA ATTGGAAGCG CCGCTGGGCA CGAAGGCGAT GGCGGTGCTG CTGCTCGCGG GAGCCTATGG CGGCGCGCTC GCCCAATATC TCGCCGATCC CGCCTCCGCC GTGCCGATGA TCGGCGCGAG CGGCGCAATC TCGGCGCTCA TCGCGGTGTT CGCGCTGATT TTCAGCCGCA CACAGGCGCC CGCGATCGGG CCGATCCCCA GCCATTGGGT GCGCGCGATC TGGCTCGCCG CAGCGTGGAT CGGCGTTCAG GTCCTGCTGG GCTTCGCGGG CGGCGCGGGG TTCGGCGCAA TCGCCATCTG GGCGCATGTC GGAGGGTTCC TGGCGGGCCT GCTGCTGGCG CGGCCGCTGC TGCGCTGGCG CTTCGGGGCG CGCTGA
|
Protein sequence | MKPQDAPLVT GYALACVILF VLLWITGFQI EAIVRAGFIP ARFGQELILP PGTLVPFVLT PLTSAFLHGG VLHIAFNMVV LLFIGRQLEA PLGTKAMAVL LLAGAYGGAL AQYLADPASA VPMIGASGAI SALIAVFALI FSRTQAPAIG PIPSHWVRAI WLAAAWIGVQ VLLGFAGGAG FGAIAIWAHV GGFLAGLLLA RPLLRWRFGA R
|
| |