| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0786 |
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| Symbol | rpsD |
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| ID | 4080430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 794477 |
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| End bp | 795088 |
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| Gene Length | 612 bp |
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| Protein Length | 203 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638009146 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_615839 |
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| Protein GI | 103486278 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.171275 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.376942 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGAAGC GCCAGAGCGC CAAGTATAAA CTCGACCGCC GGATGGGCGA AAATATCTGG
GGTCGCCCGA AGAGCCCGGT CAACCGCCGC GAATATGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGGGCA AGATGTCGGA CTTCGGCATC CAGCTCCGCG CGAAGCAGAA GCTCAAGGGC
TATTACGGCG ACATCACCGA AAAGCAGTTC AAGAAGAATT ATATCGAAGC GTCGCGGATG
AAGGGCGATA CCGGTCAGAA CCTGATCGGC CTGCTCGAAC GCCGCCTCGA TGCGGTGGTC
TATCGCGCCA AGTTCACGCC GACCATCTTC TCGGCGCGCC AGCTCGTCAG TCACGGCCAC
GTCTATGTCA ACGGCGTCAA GTGCAACATT GCCAGCCGCC TCGTGAAACC GGGTGACGAA
ATCACCCTGG GCAAGAAGGC GCAGGAAATG GCGCTCGTCG CCGAAGCGCA GAGCCTGCCC
GAGCGCGACC TGCCCGAATA TCTGGCGGTC GACGGCACCA AGGCCACCTA TGTCCGCGTG
CCGACGCTCG ACGAAGTGCC TTATCCGGTG AAGATGGAGC CTAATCTGGT CGTCGAATTC
TATTCGCGCT GA
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| Protein sequence | MSKRQSAKYK LDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKGKMSDFGI QLRAKQKLKG
YYGDITEKQF KKNYIEASRM KGDTGQNLIG LLERRLDAVV YRAKFTPTIF SARQLVSHGH
VYVNGVKCNI ASRLVKPGDE ITLGKKAQEM ALVAEAQSLP ERDLPEYLAV DGTKATYVRV
PTLDEVPYPV KMEPNLVVEF YSR
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