| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0544 |
|---|
| Symbol | |
|---|
| ID | 4081434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 558688 |
|---|
| End bp | 559392 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638008902 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
|---|
| Protein accession | YP_615598 |
|---|
| Protein GI | 103486037 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.430288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.237514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGCA CCATGCTGAC GCTTGCCGCC GCCCTGATCC TCGCCATCCA GCCCGCCGCC
GTCCCGCCGC AGGCGACGCA ATTGCCGCCG CCCGTGCCGC CGGTCCCGGC GCCGGTTACG
CCGGTGGTCG AGGCCGATAC GCGCCCCTTT GTCGCGCTCA CCACCGATCT GGGGACAATC
ACCGTGCGGA TCGAGGACAA GCGCGCGCCG GTGACAGCCG CCAATTTCCT TCGCTATGTC
GACACGAAGC GGATGGACGG GTTCCAATTC TATCGTTCGA CCCGAAGCTG GGGCCCGGCG
AACCAGCTCA TCCAGGCCGG CAATCGCGGC GATGCGCGGC GCAATTATCC GCCGATCGCG
CACGAACCGA CGACCGCCAC GGGCCTCACC CATTGCAAGG GGGCGCTGTC GATGGCGCGG
CTGAGTCCCG GCGATGCGAC GACCGACTTT TTCCTGCTGC TCTCGGACAT CAAGGGTTTC
GACGCCGATG CGCCGGGCGG CGACGGTGTG GGTTTTGCAG TGTTCGGGGA GGTCGTCGCG
GGCGCGGACG TCGCCGCGGC GATTTTCAAC GCGCCGATCT CGCCGACCGC GGGCGAGGGG
GTGATGGTGG GACAGATCCT CGACCCGCAG GTGACAATCC GCACCGCGCG CCGCGTCCCC
GCGCCTGCCG ATGCGCCCAA GGGCTGCGTG GTCAAGGCAC AATAG
|
|---|
| Protein sequence | MVGTMLTLAA ALILAIQPAA VPPQATQLPP PVPPVPAPVT PVVEADTRPF VALTTDLGTI
TVRIEDKRAP VTAANFLRYV DTKRMDGFQF YRSTRSWGPA NQLIQAGNRG DARRNYPPIA
HEPTTATGLT HCKGALSMAR LSPGDATTDF FLLLSDIKGF DADAPGGDGV GFAVFGEVVA
GADVAAAIFN APISPTAGEG VMVGQILDPQ VTIRTARRVP APADAPKGCV VKAQ
|
|---|
| |