| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0286 |
|---|
| Symbol | |
|---|
| ID | 4082646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 283576 |
|---|
| End bp | 284211 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638008644 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_615342 |
|---|
| Protein GI | 103485781 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.285949 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.371248 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCAGACA AAGGCCTTGT TATCAGCACC GTAACGCCCC AACCGCTCGA CGACGCCAGC
TTCAAGCAGG AACTGGCGGC GATGCTGCCG CACCTGCGCG CCTTTGGCCG CAGCCTGTGC
GGCAACGCCG ACCTGGCCGA CGATCTGGTG CAGGAAACGA TGCTGAAGGC GTGGAAGGCG
CGCGCGCAAT ATGTGCCGGG GCCGTCGAGC ATGAAAAGCT GGGCCTTCGT CATCCTTCGC
AACTGTTTCC TGTCGCAGAT GCGGCGCAAG AAGTTCACCG CCGAATATGA TGAACTCGCC
GCCGAACGCC TGCTCGTCGC TCCCGACGAT CAGGACGACA GCCTGCACCT CGCCGATGTC
CAGCGCGCGT TGCTCATGCT GCCCGTCGAC CAGCGTGAGG CGCTGATCCT GATCGGCGCG
GGACAGCTTA GCTACGAGGA AGCCGCGGCG ATCTGCGGCT GCGCGATCGG CACGATGAAA
AGCCGCGTCT CGCGCGGGCG CGCGGCCTTG CAAACGATAT TGGAAAGCGG CGAGATGCCG
CGGCGAAGCA CCGATGAACA GCCGTCGCAC GAAGCCTTCC GCGCGATCAT GGACCATGTC
GATGAACTGA CCGGCGGCGC GTCGACCCCT GATTAA
|
|---|
| Protein sequence | MPDKGLVIST VTPQPLDDAS FKQELAAMLP HLRAFGRSLC GNADLADDLV QETMLKAWKA
RAQYVPGPSS MKSWAFVILR NCFLSQMRRK KFTAEYDELA AERLLVAPDD QDDSLHLADV
QRALLMLPVD QREALILIGA GQLSYEEAAA ICGCAIGTMK SRVSRGRAAL QTILESGEMP
RRSTDEQPSH EAFRAIMDHV DELTGGASTP D
|
|---|
| |