| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1081 |
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| Symbol | |
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| ID | 6331946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1123266 |
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| End bp | 1125074 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 642657367 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001931252 |
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| Protein GI | 188997001 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.869839 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAAGA AAAAAAAGTT AATTGTAGCA TCAATGGTAG GCTTAACTAT AAGTGTTAAT
ATAGGCTATG CAGAAAGATT ATCTGCGGAA TTTACAAATG CTAAATTGTC AACAGTTGTT
GATGCTTTAT CTCAAATTTC TAATTTTAAT GTTATCTGGG ATAAGGATGC TATTGGACAA
AAAGATAAAT TAGTATCTCT TGCTATAAGA AAACCTATAG AGGCTGAAAA TCTTTTTAAT
TTAGCTTTGC TTGAAAATGG CCTTATTCCG GTTAAAGAGG GAGGGATTTA TAGAATTAAA
GTTGCTGATG AGTATTTTGT ATCAGTTCCA CCAGAAATAA TAAAAGCATT TGGAAAAGAT
ATGTTTGATG GTCTTGTTAC ACAGGTTAAA AAGTATACAT CCCCAGCTGC ATCGATAAAA
ATAGATAATA CAACTTATAC AATCATTGTT AAAGATGATA AAGATAATAT AAATAGATTG
AAGAATGTTA TCACTTCTTA TTTAGACTCT ATTAAGAAAC AGTCTGAATA TCTTGCAAAA
ATTCAAGAAA AAGAAGGTCA ATTTATAAAA AAGGAATTTA GTATTTCATA TGAAACTTTT
AAAACCATTG AAGATAAGAT TGCTGAAAAC TTAGGAATGT ATGGAAAATA TGATTACGAT
AAATCAAAAG AAAAATTAAT TGTTTTTGAT ACAAAAGAAA ATATAACAAA AATATCAAGA
ATAGTAGGTG AAGCAACCCA AGAGAAAATA GAGACAAAAT GTTTTTATGC AAGAGGATTA
GATCCAGGTG AATTAATAGA AAATATTAAA GAAAAAGAGC TTTCTGAAAA TGGGACAATA
GTATTCAAAT CTAAAGAAAC AATTCAAACA GGAGGTACTG AAACCAGAGA AATTTCAACA
ACTGGCCAAT CATCTCCAGT TGGTACCACA GCTGGTATTA CAAAATCATC TTCTACACCA
GCAACTATAA TAACTAATCT TCCTAAAATA TGTATTACAG ATACACCTAA GGTTATAGAA
AAGATTAAAT ATAAATATGC AGATTACCTG CTTGATAGAC CTTATCAAAT AGCCATAGAA
GCAAGAATAG TTCAGGTAAG TACGAGTAAT TTAAAAGACT TGGGTATTCA ATGGGGAGGC
AGCGCAACTA ATATCGATAA TAATAATACA AAAATAATTA CAGGCGGTGG ATCTACAAGT
GTAATTAGCG GTGGAAGATA TGCAGTTGAT TTTCCTTCAA GTTCCGCAAC GTTTCCGGGT
GGATTTGCTA TTGGTTTTGT TTTTGGAGGA TTGCAGAATT TTCTTGATGT AAGATTATCG
GCATTGCAAA GTATAGGAAG GTCTAAAATA CTTTCTAAAC CACAAATCGT AACAATAGAT
GGCGAAACAG CAGAAATTTC TCAAGGATAC GAGGTTCCAT ATACAACTGC TGTGGCAGCT
GGCGGTGGTA CTGTATCTTC AGTTTCATTT AAAAAAGCTG TATTAAAATT AAATGTGACA
CCAAGAACTA CTGCTGATGG AAATATTATC ATGGATATAA TAATTACTCA GGATATACCA
GACTTTAAAA ATTTAATTTT AGGTAACCCG CCTATTCAAA CAAAAACTGT GACAAGTAAG
GTAGTTGCTA AAGATGGTTC TGTTATTGCA ATCGGGGGAA TTTTAGAAAA AACGGAAGAT
TTAAAAGACA GTGGAGTACC AGGTTTAATG AATATCCCTA TCCTTGGATA TTTATTTAAA
GAAAACTACA AACAAGAAAA AACAAATGAA CTTTTAATCT TTTTATCACC AAGAATAGTA
TATGAATAA
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| Protein sequence | MRKKKKLIVA SMVGLTISVN IGYAERLSAE FTNAKLSTVV DALSQISNFN VIWDKDAIGQ
KDKLVSLAIR KPIEAENLFN LALLENGLIP VKEGGIYRIK VADEYFVSVP PEIIKAFGKD
MFDGLVTQVK KYTSPAASIK IDNTTYTIIV KDDKDNINRL KNVITSYLDS IKKQSEYLAK
IQEKEGQFIK KEFSISYETF KTIEDKIAEN LGMYGKYDYD KSKEKLIVFD TKENITKISR
IVGEATQEKI ETKCFYARGL DPGELIENIK EKELSENGTI VFKSKETIQT GGTETREIST
TGQSSPVGTT AGITKSSSTP ATIITNLPKI CITDTPKVIE KIKYKYADYL LDRPYQIAIE
ARIVQVSTSN LKDLGIQWGG SATNIDNNNT KIITGGGSTS VISGGRYAVD FPSSSATFPG
GFAIGFVFGG LQNFLDVRLS ALQSIGRSKI LSKPQIVTID GETAEISQGY EVPYTTAVAA
GGGTVSSVSF KKAVLKLNVT PRTTADGNII MDIIITQDIP DFKNLILGNP PIQTKTVTSK
VVAKDGSVIA IGGILEKTED LKDSGVPGLM NIPILGYLFK ENYKQEKTNE LLIFLSPRIV
YE
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