| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0937 |
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| Symbol | |
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| ID | 6332461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 972058 |
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| End bp | 974874 |
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| Gene Length | 2817 bp |
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| Protein Length | 938 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 642657232 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_001931118 |
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| Protein GI | 188996867 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0616253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTAT ACACAGGCAA CAGTTCATAT TGTGAATATT TACTTATTCA AAAAGAGAAG
CCTTTATTTT TGATAACAGA CTCTGAAAAG TCTGCAAAAG AAAGCTTTTT AAATCTTAAG
GCTTATAAAG ATTTCTTTAA AAAAGACCTT GAAATTATTC ATTTTCCATC TTCTCAAGAA
AAACTTGACC TTTTAAGTCA GATTGAGAGA AATTATGCTA TCTATAAAAT CTTAGCAGGA
AAAAATTGGA TTTTAGTATT TTCCAAAGAT GCTTTAAATG TAAAGGTTAG AACAAAAGAA
AATTTCTTAA AAGACATTAT CAATATAAAG AAAAGCGGGG AGTTAAACAG AGAATTTTTG
ATAGAAAAAC TTTATAAACT TGGATACATA AGAGAAGAAT TTCCAGAAAA TGAAGGAGAA
TTTTCTGTAA GAGGTGGCTT TTTATCTATC AACATTCCAA AGGTAGGCAT AGTAGATATA
GATTTTTTCG GTGATACAAT AGAAAACATC TTTTTAAAAT CAAAAATCTT AACAAGAAAA
GAAATAGAAG AAATATCCAT TCTGCCACTT TATGACTTTA ACATCAAATC ACAAACGCCA
CTTATTTTTG AAGATGAAGA AAGTACCTTT TTTAGAGATT ATTTAAAAAA CGATATTTAC
ACCTTAGATA TCTATGAAGA CTTAAATTTA CCTATCAAGG GTCAATTTTT CTCAAAATTT
TCTAATCCTG AGGTTGGAAC TATAAAAGAT ATTACACAAG AGTTTGCTGT CTATAAAATT
CCATTAAAAA AAGAACTTGT ACTACTTAAT GAAAAAACGG CTTTCCTGCT AGAGGTTGAA
GAAAAGTTAG AGTTAGATGT TGAGCCTTTA AAGGAAGGTG ATTATATAAT TCATGAAGAT
TTTGGAATAG GTATCTACAG AGGGATAGAG ACAAGAGAGA TTAGAGGAAA AGTTTATGAT
TTTATGATTC TTGAGTATTC AGGCGGTGAG AAGGTTTATG TATCATATCT TCATTTTGAT
AAAATTCATA AATACAAAAC CGATTCTATC ATTCAGATTG ATAAAATCGG CGGTACTTCT
TGGAGAAATC TAAAGAAAAA AGTTAAAGAG TCTTTAAAAA ATATTGCAAA AAATCTGTTA
GAGATCTATT CAAAAAGACA AAATATATAC AGACCACCAT TAAAAACAGA TGATGAGCTA
ATAAGCAAGT TTGAAAGAGA GTTTCCATTT GTAGAAACAC CAGACCAGAT AAAAGCCATA
AAAGACATAA AAAGCGATTT TTTAAAGCCA AAGCCAATGG AAAGGCTAAT ATGTGGAGAT
GTTGGCTTTG GTAAAACCGA AGTAGCCATC AGAGGTATTT TTATATCTGT AATAAATGGA
TACCAAGCTC TGCTTTTGGT TCCAACTACT GTCCTTGCTT ATCAGCATTA TAAAAAATTA
AAAGAAAGGC TTGAACCTTA TGGAATAATC GTAAAAAATC TTTCAAGATT AAAATCAAAA
AAGGAAAATG ATAATACAAT AAAAGCTTTT GAAGAAGGAA AAATAGACGT TTTGGTAGCA
ACTCATAAAA TCTTACATAC TAACCTATCT TTTAATAAGC TTGAGCTCCT TGTGATTGAT
GAAGAGCATA GATTTGGAGT AAAAGCAAAA GAAAAAATAA GACAGATAAG AGAAAGTGTA
GATACTTTAT ACTTAACTGC AACGCCAATT CCAAGAACAT TAAACATGGC ACTTTCAGGA
CTAAAAGATA TATCAGTTTT AAACACACCA CCGGAGGGAA GGTATGAGAT AAAAACATAT
GTTTCAAATT TTGATGAAGA GCTTATAAAA AAAGCCATTG AATTTGAAAT AGACAGAAAC
GGACAGGTTT TTTATCTACA TAACAGAATA GAGACAATCA AAGAAACAGC AGATTTTTTA
AAAAACTTAG TCAAAAAGGC AAAAGTAGAC TTTATACATG GTAAAATGAA GCCTTCCGAG
ATTGAAAAAA AGATTATTGA TTTCTTAGAA GGGAAAACAA ACGTTTTAAT TTCTACTTCT
ATTATTGAAA CAGGAATAGA TATTCCAACA GCCAATACTT TAATCGTAGA TAGAGCTGAT
TTGTTTGGAC TTGCACAGCT TTATCATTTA AGAGGAAGGG TCGGAAGAGG TAATATTCAA
GCTTACTGCT ATTTGATAGT TCCAAAAGAA ATAACAAAAG ATGCAAAAAG AAGAATAGAT
ACACTTTTAA AACTAACAAG GCCGGGCTCA GGCTTAAAAG TATCTATTGA AGATATGCAA
ATAAGAGGAC CAGGGAATAT TCTCGGGGTT GAGCAAAGCG GTTTTATAAA ATCCTTAGGC
TTTGATTACT ACGTTAAACT TTTAAAAGAA GCTATCAACG AAGAAAGGGG AGAGAAAGAG
TTTGAAGCCG AAATAGAGAT AGATTTTGAT TATTACATTC CACAAGATTT TATTAAAGAC
CCGACTGAAA GGTTAAATAT ATACATGGCT GTGTCAAAAG CAGAAGATTA TGAAGAGATA
GAAAAATTAA GAAAATACTT AAAAGAATTT TACAATGATT TACCAAAAGC ATTTGATTTA
TACTTAGTTA TCTCAGAGAT AAAAAAGTTA CTATCCCGGT TAAAAATAAA AAAACTTCAT
ATGAAATCAG ATTTAGCTTA CTTACAACTA TCAGACCAAA CAAATCCAGA AGTAATATTA
AAGCTTATAG AAAATCTAAA TCCAGTCAAA ATTGAAAAAG AAAAAATCAT TTTCCAGGTA
GAAAGCTTAG AAGAGCTAAA AGAGAAAATA TTGGAAGGCG TAAAGAGTCA AAAGTGA
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| Protein sequence | MKVYTGNSSY CEYLLIQKEK PLFLITDSEK SAKESFLNLK AYKDFFKKDL EIIHFPSSQE
KLDLLSQIER NYAIYKILAG KNWILVFSKD ALNVKVRTKE NFLKDIINIK KSGELNREFL
IEKLYKLGYI REEFPENEGE FSVRGGFLSI NIPKVGIVDI DFFGDTIENI FLKSKILTRK
EIEEISILPL YDFNIKSQTP LIFEDEESTF FRDYLKNDIY TLDIYEDLNL PIKGQFFSKF
SNPEVGTIKD ITQEFAVYKI PLKKELVLLN EKTAFLLEVE EKLELDVEPL KEGDYIIHED
FGIGIYRGIE TREIRGKVYD FMILEYSGGE KVYVSYLHFD KIHKYKTDSI IQIDKIGGTS
WRNLKKKVKE SLKNIAKNLL EIYSKRQNIY RPPLKTDDEL ISKFEREFPF VETPDQIKAI
KDIKSDFLKP KPMERLICGD VGFGKTEVAI RGIFISVING YQALLLVPTT VLAYQHYKKL
KERLEPYGII VKNLSRLKSK KENDNTIKAF EEGKIDVLVA THKILHTNLS FNKLELLVID
EEHRFGVKAK EKIRQIRESV DTLYLTATPI PRTLNMALSG LKDISVLNTP PEGRYEIKTY
VSNFDEELIK KAIEFEIDRN GQVFYLHNRI ETIKETADFL KNLVKKAKVD FIHGKMKPSE
IEKKIIDFLE GKTNVLISTS IIETGIDIPT ANTLIVDRAD LFGLAQLYHL RGRVGRGNIQ
AYCYLIVPKE ITKDAKRRID TLLKLTRPGS GLKVSIEDMQ IRGPGNILGV EQSGFIKSLG
FDYYVKLLKE AINEERGEKE FEAEIEIDFD YYIPQDFIKD PTERLNIYMA VSKAEDYEEI
EKLRKYLKEF YNDLPKAFDL YLVISEIKKL LSRLKIKKLH MKSDLAYLQL SDQTNPEVIL
KLIENLNPVK IEKEKIIFQV ESLEELKEKI LEGVKSQK
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