| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0118 |
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| Symbol | trmD |
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| ID | 6331315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 131417 |
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| End bp | 132181 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 32% |
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| IMG OID | 642656397 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001930318 |
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| Protein GI | 188996067 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00000124693 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATAT ACATAATTAC TATATTTCCA GATTATTTTG AATGTTTTAA AAATTATGGA
GTTGTAAATA AAGCTATAAA AAGCGGACTT GTTGAGATAA ACACTATAAA TCTTAGAGAT
TTTACATCAG ATAAGCACAA AACAGTTGAT GACGTTGTTT ATGGTGGTGG TCCCGGTATG
CTTTTAAAGC CAGAACCTAT ATTTAAAGCA TTTGACTATA TAAAAAATAT ATCCAAAAAT
CCTTATACTA TAATAACCGA GCCATGGGGA AAAACTTTTA ATCAAGAGAT GGCAAGAAAA
TTGGCAGAAA AAGAAGAGCT TGTAATAATT TGTGGAAGGT ATGAGGGGGT TGATGAAAGA
GTTAAAACGT TAGTAGATGA GGAAATATCT ATCGGTGATT ATATTTTATC GGGTGGAGAG
CCGGCTACAT TGGTTATTAT GGATAGTGTT ATTAGATTGC TTCCGGGTGT TTTATCTGAT
GACGAAAGTA AGGAAGTAGA TTCTTTCAGT GATGGACTGC TTGGATACCC TAACTACACA
AGACCGGCTG AATTTAGAGG TATGAAAGTC CCGGAAGTTT TACTATCCGG TAATCATAAA
TTGATAGAAA AATGGAGGAG GTTTCAAAAA CTAAAAAGAA CTTACAAAAA TAGACCAGAT
TTATTAGAAA AAGCAAAATT ATCTGTTGAA GATAAACAGT TATTAAAGTA TATTATAGAA
GGTAAAGAAT TTGAAGATTT GATTAAAGAG GGAAAAATTG CTTAG
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| Protein sequence | MKIYIITIFP DYFECFKNYG VVNKAIKSGL VEINTINLRD FTSDKHKTVD DVVYGGGPGM
LLKPEPIFKA FDYIKNISKN PYTIITEPWG KTFNQEMARK LAEKEELVII CGRYEGVDER
VKTLVDEEIS IGDYILSGGE PATLVIMDSV IRLLPGVLSD DESKEVDSFS DGLLGYPNYT
RPAEFRGMKV PEVLLSGNHK LIEKWRRFQK LKRTYKNRPD LLEKAKLSVE DKQLLKYIIE
GKEFEDLIKE GKIA
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