Gene STER_1384 details

Gene Information

• Locus tag: STER_1384
• Symbol: rimM
• ID: 4437055
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Streptococcus thermophilus LMD-9
• Kingdom: Bacteria
• Replicon accession: NC_008532
• Strand: -
• Start bp: 1294774
• End bp: 1295292
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 639676995
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_820748
• Protein GI: 116628129
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.00157124
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATATT ATAACGTTGG AAAGATTGTA AATACACAGG GATTGCAGGG TGAACTTCGT 
GTTTTGTCTG TAACAGATTT TACGGACGAA CGTTTTAAGA AGAAGAGTGT ACTAGCTCTT 
TTTGATGACA AAGATAATTA CATCATGGAT GTTGAGGTTG CGAGTCACCG TAAGCATAAG 
AACTTTGATA TTGTTAAGTT TAAAGGTCTT TACCATATCA ATGATGTAGA AAAGTATAAG 
GGCTGTAGCC TAAAGATTGC TGAGGAAAAT CTAACAGATC TTGATGACGG TGAATTTTAC 
TATCATGAAA TCATTGGTCT TGATGTCTAT GAGGGTAATA CGCTAATCGG TCAGGTTAAA 
GAGATTCTCC AACCGGGTGC TAATGATGTT TGGGTAGTGA AACGTAAAGG GAAAAAAGAC 
CTGCTCTTGC CATATATTCC ACCAGTTGTT CTTGATGTTG ACGTCGCAGC CGGTCGTATT 
GAGGTTGAGC TCATGGAAGG ATTAGACGAT GAAGATTGA 

 

Protein sequence

MTYYNVGKIV NTQGLQGELR VLSVTDFTDE RFKKKSVLAL FDDKDNYIMD VEVASHRKHK 
NFDIVKFKGL YHINDVEKYK GCSLKIAEEN LTDLDDGEFY YHEIIGLDVY EGNTLIGQVK 
EILQPGANDV WVVKRKGKKD LLLPYIPPVV LDVDVAAGRI EVELMEGLDD ED