| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_A0110 |
|---|
| Symbol | |
|---|
| ID | 1172533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004349 |
|---|
| Strand | + |
|---|
| Start bp | 90085 |
|---|
| End bp | 94311 |
|---|
| Gene Length | 4227 bp |
|---|
| Protein Length | 1408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637346559 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | NP_720436 |
|---|
| Protein GI | 24376328 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATA AACACTATAT ATCCTCTCTT ATCCCCGCAG CACTATTAGG TTTTTTCTTG
GTGGGCTGTA GCGGTGAGAG TCGTAACAAT TTCATTGATC CAGATGCTGC CCGCTTAGTG
GCACATCCAC AAGTATTTGT ACTCAAACAA GGTGAGACCC AGCGCGTTGA TTTAACTCAA
TCGGTGGTTG CAAAAAATGT TGCTAGTTGG AAAATAGCCG ACCTAGACGA TAAGACTGGA
TTGGGCACAA TACTTAACCC GCAAGCGACA TATTTTGACT ACCAAGCCAC TCAGTCGGGG
GCGGGTTCAT TTAATTACAC GGTCAAAGGT GACAACCTCA CTGCGACCTC TCAAATCGTG
TTAGCCGTCA ATGCGGGTGA AACCCCAGGC AACAATATTC CAGTTGCCGA TAATATCACC
TTAAGTACGT TCAATAATGT CGATGCGATT ATTGATTTGT CTGCCTATAT TACGGATGCA
GACGGTGACA CGCTGCGCAT CAATAAACTG GTTTCTGCAT CGAATCGCTT TACGTTAAAT
GGCTTTCAAG TCACCTTTGC GCCCGATGGC TTTGTAGGGG TAGACCAAGC AGTTTACAGT
GTTGACGATG GCCGTGGTGG CTATGCGTTA GCCTACATTG TAGTGACATC AAATGATGCC
AATCCGCCAG CGCCTAATAC CGCGCCGGTG GCTAAAGATG ATAGCCTGTC AATGGATGTG
GCTAAGCAGT CGGTATTAAA CATCAACCTG AGTGGCCTTA TCAGTGATGC GGATGGCGAT
AGCCTTAAGG TGGTTACGCT GTACAGTCAT AATGACCGCG CAGTGCTCAA GGAAAATGCG
AGTGTTGACT ATACGCCAGG CAATTTCCGC GGCGTGGATC AGTTTACTTA TTTAGTGTCT
GACGGCAAAG GCGGCTATGA TCTCGGCACG GTGACGGTCA CAGTGGGTGA CTCAACCCCA
CCGACCCCTC CGACGCCCTC GCTTGTTGCC TATCAACAAG CCTTTGTATT AGATGTAGAC
CAACTGCAGA CGATTGATGT TACCCAATCT GTCACCAGTG AACACCTTGA TGCTTGGTCA
CTGACCACAG TGCAAGACAG TACTAATCTG GGCGTGGTTT CAGCAAAAAC AGCAACGACA
TTTAATTACT TAGCCCAAAC GCCTGGCGTT GCTCAAATTG ACTATAGCGT GCAAGGCGGC
AGCTTATCGG CAAACTCAAC CATTACGGTT GCCATCAACG CCCCTGTCAC GCCAGATAAT
CATCGCCCTG AAGCGCAAGA CACACAGCTT GAGACGTTGA ATAACGCCAG CAAGACGATT
GATTTGCAGG GCAAAATTAG CGATGTAGAT GGCGATACGC TTTCGATAAC ACTGCACGGC
AGCGCTCGTT TTAGCCTGAA TGGTACTCAA GTGACCTTTA CTCCCAACGG ATTTGTTGGC
TTGGATCAAG CCGTCTATAG CGTTGAGGAT GGTAAAGGGG GCTATGCCCT AGCCAATATT
GTGGCGATAT CTGAGGACGC TAATCCGCCT GTTCCCAACA TGGCGCCTAC GGCGAATGAT
GCACAATTTA CCCTTGATGT GGCCAAAAAT GTGACATTCA ACATCGATTT GGTGGCGCAA
CGTTTAATTG CGGATGCGGA CGGAGATGCG CTCTCTATCG CACATATCTA CACCGCCAAT
AATCGTGCCA CCAAACAAGG TGCGACAGGC ATCACTTATA CCCCTGGCGC ATTTCGTGGT
GTAGACCAAT TTACTTATGT GATTACCGAT GGCAAGGATG GCTATGCCAT AAATGCCATT
ACGGTGGTTG TTAATGACAG CACGCCTGCA AATAAAATTC CAACTGCAGG GCCTGTTACT
GCCAAGATGT TGCACAATGA CCCAGCTATC ACCATTTCAG TCAACAGCGC TGTTAGTGAT
GCCGATGGTG ATACACTGAA AATCGTAAGT ATCTCTGGCG CACTAGGCCA AGCCAGTATC
AACCCTGCTA ACGCGTTAGA AATGTTGTAT GAACCGAAGG GCTTTGTGGG AACTGACCGT
TTTGTGTATG TCGTCAGTGA CGATAACGGC GGCTATGCAA TGGGTGAAGT GACGGTAACG
GTCACCGACA GCAACCCTAC TGCGCCAGTG GCTAACACGG TGCAAGAAAA TACCTTGCTG
GATACACCTA TCAACATTGA CCTGTCGGCT TATATTTCCG ACAAGGAAAC CGAAACGGCG
AATTTAGTCA TTAGCAATGT GACTAATGCA ACATCGCCAG CAGTCGCGAC CTTAAGTGGT
CAAACCGTCA TTTATACACC AAATGGCTTT ACCGGTAATG ATATTTTAAC CTACACAGTT
ACTGATGGCC GCCACAGTAC CAATGGTACA ATCGTGATTA GCGTTAATGC CCATGGCGCG
CACGCCATCC AAGCGGACAA CCTAGAGGGC GGCACTGAGC CTAACGCACC ATTCATCCAT
GACTTAAGTG CATTAATTAG CACCACCGAC CCCACGGCAG GCGAGTTAAT TGTTGTTAAT
GCCATTGGTG GTGCACTAGG TACTGCGACA GTCACCAATA ATATTTTAAC TTACACCCCT
AAGTTGGGCG TCTTTGGTAA AGACAGGCTA ATTTATACCG TAAAAGACAG CCATAACCCT
GCTCATTATA CGCAAGGAAC GATTTCTATC ACAATTTTTG CACCAGCCAA GCCTGAAATT
ACCAAGCTTG AAGCTAAAAA AGAAACCGAT GGTTATCTGA AAGCCTATGT GACATGCCGA
ACTTGCGATG TAACGCAGTA TAAGTACGCG TGGATAATTA ACGGCCTTAC CAAAAGCACC
GGAGAAACCT ATATCCCTAC CGCTGCAGAT GATGGTTTTA ATATACGGCT TGAAGTGACA
GGGCAAGATG CCTATGGCCA AGTGACCGAA ATGCAGTATG TAGTGTATGC CTTCAGTAAA
GTTGAGACAA TTTTTTCAGA TATGTACGCA TTTGCTGCAC TGAAAACTGA TGGCTCAGTG
GTCACTTGGG GGTACTCAGA CTATGGCGGA GATAGCAGCA GCGTGGCAGG GCAGCTGACG
TCCGGCGTTA AGGTGATTGA CTCAACTAGC AGTGCATTTG CAGCCATCAA AGAGGATGGC
AGCGTGGTCA CTTGGGGGGA CTCACCCTAT GGCGGAGATA GCAGCAGCGT GGCAGGGAAA
CTGACCTCCG GCGTTAAGGT GATTTACTCA AATAGCAGTG CATTTGCAGC CGTCAAACAG
GATGGCAGCG TGGTCACTTG GGGGAGCTAT GGCGGAGATA GCAGCAGCGT GGCAGGGCAA
CTGACGTCCG GCGTTAAGGT GATTTACTCA ACTGACAGTG AATTCGGTGC ATTTGCAGCC
GTCAAAGAGG ATGGCAGCGT GGTCACTTGG GGGAACTCAC CCTATGGCGG AGATAGCAGC
AGCGTGGCTG GGCAACTGAC CTCCGGTGTT AAGGTGATTT ACTCAACTAA CAATGCATTT
GCAGCCGTCA AAGAGGATGG CAGCGTGGTC ACTTGGGGGG ACTCAGGCGC TGGCGGAGAT
AGCAGCAGCG TGGCAGGGCA ACTGACCTCC GGTGTTAAGG TGATTTACTC AACTAACAAT
GCATTTGCAG CCGTCAAAGA GGATGGCAGC GTGGTCACTT GGGGGGGCTA TGGCGGAGAT
AGCAGCAGCG TGGCAGGGCA ACTGACGTCC GGCGTTAAGG TGATTTACTC AACTAACAAT
GCATTTGCAG CCGTCAAAGA GGATGGCAGC GTGGTCACTT GGGGGGACTC AGGCAATGGC
GGAGATAGCA GTAGCGTGGC AGGGCAGCTG ACGTCCGGCG TTAAGGTGAT TGACTCAACT
TACAGTGCAT TTGCAGCCGT CAAAGAGGAT GGCAGCGTGG TCGCTTGGGG GAACTCAGGC
TATGGCGGAG ATAGCAGTAG CGTGGCAGGG CAACTGACGT CCGGTGTTAA GGTGATTGAC
TCAACTACCA GTGCATTTGC AGTCGTCAAA GAGGATGGCA GCGTGGTCAC TTGGGGGGGC
TCATTCTATG GCGGAGATAG CAGCAGCGTG GCAGGACAGC TGACGTCCGG CGTTAAGGTG
ATTTACTCAA CTAGCAGTGC ATTTGCAGTC GTCAAAGAGG ATGGCAGCGT GGTCACTTGG
GGGGGCTCAT TCTATGGCGG AGATAGCAGT AGCGTAGCTG ATAAATTAGC CCCTAACCTA
TTTCTGATAG AAACCTCGAT TAACTAA
|
|---|
| Protein sequence | MINKHYISSL IPAALLGFFL VGCSGESRNN FIDPDAARLV AHPQVFVLKQ GETQRVDLTQ
SVVAKNVASW KIADLDDKTG LGTILNPQAT YFDYQATQSG AGSFNYTVKG DNLTATSQIV
LAVNAGETPG NNIPVADNIT LSTFNNVDAI IDLSAYITDA DGDTLRINKL VSASNRFTLN
GFQVTFAPDG FVGVDQAVYS VDDGRGGYAL AYIVVTSNDA NPPAPNTAPV AKDDSLSMDV
AKQSVLNINL SGLISDADGD SLKVVTLYSH NDRAVLKENA SVDYTPGNFR GVDQFTYLVS
DGKGGYDLGT VTVTVGDSTP PTPPTPSLVA YQQAFVLDVD QLQTIDVTQS VTSEHLDAWS
LTTVQDSTNL GVVSAKTATT FNYLAQTPGV AQIDYSVQGG SLSANSTITV AINAPVTPDN
HRPEAQDTQL ETLNNASKTI DLQGKISDVD GDTLSITLHG SARFSLNGTQ VTFTPNGFVG
LDQAVYSVED GKGGYALANI VAISEDANPP VPNMAPTAND AQFTLDVAKN VTFNIDLVAQ
RLIADADGDA LSIAHIYTAN NRATKQGATG ITYTPGAFRG VDQFTYVITD GKDGYAINAI
TVVVNDSTPA NKIPTAGPVT AKMLHNDPAI TISVNSAVSD ADGDTLKIVS ISGALGQASI
NPANALEMLY EPKGFVGTDR FVYVVSDDNG GYAMGEVTVT VTDSNPTAPV ANTVQENTLL
DTPINIDLSA YISDKETETA NLVISNVTNA TSPAVATLSG QTVIYTPNGF TGNDILTYTV
TDGRHSTNGT IVISVNAHGA HAIQADNLEG GTEPNAPFIH DLSALISTTD PTAGELIVVN
AIGGALGTAT VTNNILTYTP KLGVFGKDRL IYTVKDSHNP AHYTQGTISI TIFAPAKPEI
TKLEAKKETD GYLKAYVTCR TCDVTQYKYA WIINGLTKST GETYIPTAAD DGFNIRLEVT
GQDAYGQVTE MQYVVYAFSK VETIFSDMYA FAALKTDGSV VTWGYSDYGG DSSSVAGQLT
SGVKVIDSTS SAFAAIKEDG SVVTWGDSPY GGDSSSVAGK LTSGVKVIYS NSSAFAAVKQ
DGSVVTWGSY GGDSSSVAGQ LTSGVKVIYS TDSEFGAFAA VKEDGSVVTW GNSPYGGDSS
SVAGQLTSGV KVIYSTNNAF AAVKEDGSVV TWGDSGAGGD SSSVAGQLTS GVKVIYSTNN
AFAAVKEDGS VVTWGGYGGD SSSVAGQLTS GVKVIYSTNN AFAAVKEDGS VVTWGDSGNG
GDSSSVAGQL TSGVKVIDST YSAFAAVKED GSVVAWGNSG YGGDSSSVAG QLTSGVKVID
STTSAFAVVK EDGSVVTWGG SFYGGDSSSV AGQLTSGVKV IYSTSSAFAV VKEDGSVVTW
GGSFYGGDSS SVADKLAPNL FLIETSIN
|
|---|
| |