Gene SO_4345 details

Gene Information

• Locus tag: SO_4345
• Symbol: ilvD
• ID: 1171949
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4537295
• End bp: 4539154
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637346073
• Product: dihydroxy-acid dehydratase
• Protein accession: NP_719869
• Protein GI: 24375826
• COG category: [E] Amino acid transport and metabolism; [G] Carbohydrate transport and metabolism
• COG ID: [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase
• TIGRFAM ID: [TIGR00110] dihydroxy-acid dehydratase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAGT TACGATCAGC TACCAGTACG GAAGGCCGCA ATATGGCGGG TGCCCGTGCG 
CTATGGCGCG CCACCGGGGT GAAAGACAAT GATTTTGGTA AGCCGATTAT TGCGATTGCC 
AACTCCTTTA CTCAGTTTGT TCCCGGCCAT GTGCACTTAA AAGATATGGG CTCACTGGTG 
GCGAGTGCGA TTGAAGAGGC GGGCGGTATC GCCAAAGAAT TCAATACTAT CGCCGTCGAC 
GATGGTATCG CCATGGGCCA CGGTGGCATG CTCTACAGTT TGCCCTCGCG GGAGCTGATT 
GCCGATAGTG TGGAGTACAT GGTCAATGCC CACTGCGCCG ATGCCTTAGT GTGTATCTCC 
AACTGCGACA AAATCACTCC CGGCATGTTG ATGGCGGCGC TGCGTCTCAA TATTCCCGTG 
GTATTTGTGT CGGGTGGGCC GATGGAAGCG GGTAAAACCA AACTGTCGGA CAAACTTATC 
AAGCTCGATT TAGTCGATGC CATGGTGGCG GCGGCCGACT CGAGTGTGAG CGATGAAGAT 
AGCGCCAAAA TCGAGCGCAG TGCTTGCCCG ACGTGTGGTT CCTGTTCGGG CATGTTCACC 
GCCAACTCTA TGAACTGTTT GACCGAAGCC CTGGGGTTAT CGCTGCCGGG CAACGGCTCC 
ATGCTGGCAA CCCATAGCGA TCGCCGCGAG CTGTTTTTAG AGGCGGGCCG GCGCGTGATG 
GCGCTGACCA AGCGTTATTA CGAGCAAGAT GACACCTCGG CGCTGCCGCG TAATATCGCC 
TGCTTTAAAG CTTTTGAGAA CGCCACCGCA TTAGATATCG CCATGGGCGG TTCGTCTAAT 
ACTGTGTTGC ACTTGTTAGC GGCGGCGCAG GAGGCGGAAG TCGCATTTAC TATGGACGAT 
ATCGACCGTA TGTCGCGCCT TGTGCCGCAC CTTTGTAAAG TCGCCCCATC GACGCCTAAA 
TATCATATGG AAGATGTGCA CCGCGCCGGT GGCGTGATGG GCATTTTAGG CGAGCTTGAC 
CGCGCCGGAT TGCTGCATAC CGATGTGCCA CACGTTGCCG CCGATGCAGG CGGAAATCTC 
AAGTCGGTGC TTGCCAAGTA CGATGTCATG CAAACCCAAG ATGACAACGT AAAACAATTC 
TTTATGGCGG GACCTGCGGG CATCCCCACC ACTAAAGCCT TTAGTCAAGA CTGCCGCTGG 
CCATCGCTGG ATGATGACAG GCGAGAAGGG TGTATCCGCA GCCGCGAATT TGCCTTTAGC 
CAAGAAGGCG GGCTGGCCGT GCTGTCGGGC AATTTAGCTG AAAATGGCTG TATTGTTAAA 
ACGGCGGGCG TGGATGAGTC GAATTTGATT TTTGTTGGCT CGGCTCGCGT CTACGAAAGC 
CAAGATGATG CGGTGGCGGG CATTTTAGGT GGCGAAGTAG TGGCGGGCGA TGTGGTCGTC 
ATCCGTTACG AAGGGCCAAA AGGTGGTCCG GGTATGCAAG AAATGTTGTA CCCCACCAGT 
TACTTAAAAT CCCGCGGCTT AGGCAAGGCC TGCGCGCTAA TCACCGATGG ACGTTTCTCT 
GGTGGAACAT CCGGTTTATC CATCGGCCAT GTGTCGCCCG AGGCGGCGGC TGGCGGCACG 
ATTGCCTTGA TTGAAAACGG CGATCGCATT GAAATCGATA TCCCAGCGCG CAGTATTAAG 
CTCGCTGTGA GCGATGCCGA GTTAGCGGGG CGTCGTGAGA CCATGTTAGC GCGTGGTCCA 
ATGGCGTGGA AGCCTGTTGG TCGCGAGCGT TTTGTATCTA TGGCACTAAA AGCCTACGCC 
ATGCTTGCCA CCAGTGCCGA TAAGGGCGCG GTGCGCGATC GCAGCAAGTT GGAGGACTGA 

 

Protein sequence

MPKLRSATST EGRNMAGARA LWRATGVKDN DFGKPIIAIA NSFTQFVPGH VHLKDMGSLV 
ASAIEEAGGI AKEFNTIAVD DGIAMGHGGM LYSLPSRELI ADSVEYMVNA HCADALVCIS 
NCDKITPGML MAALRLNIPV VFVSGGPMEA GKTKLSDKLI KLDLVDAMVA AADSSVSDED 
SAKIERSACP TCGSCSGMFT ANSMNCLTEA LGLSLPGNGS MLATHSDRRE LFLEAGRRVM 
ALTKRYYEQD DTSALPRNIA CFKAFENATA LDIAMGGSSN TVLHLLAAAQ EAEVAFTMDD 
IDRMSRLVPH LCKVAPSTPK YHMEDVHRAG GVMGILGELD RAGLLHTDVP HVAADAGGNL 
KSVLAKYDVM QTQDDNVKQF FMAGPAGIPT TKAFSQDCRW PSLDDDRREG CIRSREFAFS 
QEGGLAVLSG NLAENGCIVK TAGVDESNLI FVGSARVYES QDDAVAGILG GEVVAGDVVV 
IRYEGPKGGP GMQEMLYPTS YLKSRGLGKA CALITDGRFS GGTSGLSIGH VSPEAAAGGT 
IALIENGDRI EIDIPARSIK LAVSDAELAG RRETMLARGP MAWKPVGRER FVSMALKAYA 
MLATSADKGA VRDRSKLED