| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4319 |
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| Symbol | |
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| ID | 1171924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4505665 |
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| End bp | 4507119 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637346045 |
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| Product | HlyD family secretion protein |
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| Protein accession | NP_719844 |
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| Protein GI | 24375801 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTGCTGA TGGTCCTAAA GCTGAAGTGT TGGAAAAACT CAATTTTGGC CTTGTTAACG
GAGGCGCTAA AAATGAGTAA AAACCTAACG GCAAATGATT TAGACATGGT TGATGACGTT
TATGGCGCCA TGATGACAGA TGCACCTAGT GGGCATAGGC TCATCATATG GGCTTTAGCC
GCCATGGTTG CCTGCTTTCT ACTATGGGCT GGTTTTGCCG AACTCGATAC AGTAACCACG
GGTTCGGGTA AAGTGATCCC TTCTTCTCAA GTGCAAGTTA TTCAAAGCCT TGATGGCGGG
ATCATGCAAG AGCTGTTTGT TCGAGACGGT GATCTTGTCA CTAAAGGCCA ACCACTCGTT
CGGATTGATG ATACGCGTTT TCGCTCTGAT TTTGCCCAGC AGGAGCAAGA AGTCTTTGGT
TTAAAGACGA ATGCAATCCG TATGCGCGCA GAGTTAGATA GCATACTCAT ATCGGATATG
ACTTCCGACT GGCGTGAACA AGTCAAAATC ACCAAAAAAG ACTTAGTGTT TCCCGACAGT
ATTATTCAGG CAGAGCCTGC CCTCGTGAAA AGGCAGCAGG AAGAATATAG CGGTCGTTTA
GATAATCTGA GTAACCAACT GGAAATTCTG GTTCGTCAAA TCCAGCAAAG ACAGCAAGAA
ATTGATGATC TCGCATCAAA AACAACGACG TTAACAACCA GTATGCAGTT GATTTCTAGG
GAATTAGAAC TCACTCGACC ACTCGCTAAA AAAGGAATTG TGCCCGAGGT TGAACTGCTA
AAACTTGAAC GCGCAGTTAA CGATGCGCAA GGTGAGTTAA ATTCATTACG ACTGCTGAGA
CCGAAGCTTA AAGCAGCATT AGACGAAGCG ATATTAAAGC GACGTGAAGC GGTATTTGTT
TACGCGGCGG ACCTGCGGGC ACAGCTTAAC GAAACACAAA CCCGTTTATC CCGAATGAAT
GAAGCTCAGG TGGGAGCTCA GGATAAGGTA AGTAAAGCGA TTATCACCTC CCCCGTAAAC
GGCACCATTA AGACAGTGCA TATCAACACC TTAGGTGGTG TAGTTCAACC AGGGGTTGAT
ATCATTGAAA TCGTCCCCTC TGAAGACCAA TTACTAATAG AAACCAAGAT CTTACCTAAG
GATATTGCGT TTTTACATAC AGGTTTACCT GCAGTAGTTA AGGTAACGGC CTATGACTTT
ACCCGCTACG GTGGGCTCAA AGGTACAGTC GAGCATATAA GTGCCGATAC CTCACAGGAT
GAAGAAGGAA ATAGCTTCTA CCTTATAAAG GTCAGAACCG AAGAATCGAG TTTGATAAAA
GACGATGGCA CACAGATGCC AATTATACCG GGGATGTTAA CAACCGTTGA CGTCATCACC
GGACAAAGAT CCATTCTTGA GTACATTTTA AATCCAATTT TAAGGGCTAA GGACACAGCG
CTCAGAGAGC GTTAA
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| Protein sequence | MLLMVLKLKC WKNSILALLT EALKMSKNLT ANDLDMVDDV YGAMMTDAPS GHRLIIWALA
AMVACFLLWA GFAELDTVTT GSGKVIPSSQ VQVIQSLDGG IMQELFVRDG DLVTKGQPLV
RIDDTRFRSD FAQQEQEVFG LKTNAIRMRA ELDSILISDM TSDWREQVKI TKKDLVFPDS
IIQAEPALVK RQQEEYSGRL DNLSNQLEIL VRQIQQRQQE IDDLASKTTT LTTSMQLISR
ELELTRPLAK KGIVPEVELL KLERAVNDAQ GELNSLRLLR PKLKAALDEA ILKRREAVFV
YAADLRAQLN ETQTRLSRMN EAQVGAQDKV SKAIITSPVN GTIKTVHINT LGGVVQPGVD
IIEIVPSEDQ LLIETKILPK DIAFLHTGLP AVVKVTAYDF TRYGGLKGTV EHISADTSQD
EEGNSFYLIK VRTEESSLIK DDGTQMPIIP GMLTTVDVIT GQRSILEYIL NPILRAKDTA
LRER
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