Gene SO_4151 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4151 
Symbol 
ID1171761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4326131 
End bp4327135 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content49% 
IMG OID637345880 
Productpolysaccharide deacetylase family protein 
Protein accessionNP_719680 
Protein GI24375637 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCAAC GTCGACAATT TTTAAAGACC AGTTTACAGG CGGGCGGCGC TTTTATTGCA 
GGGGTAGGGC TAAGCCAGTC TGCATTTTCA ATGGGAGTTT CGGGCTTAGT GACACTCGAT 
GATAAGACAC AAACTTCGGT AGGAGGCAGT ATGAATAACC GTTTTTGGCC TAATGGCGAG 
CAACTGGTGA TCTCGATATC CATGCAGTTT GAGGCTGGCG CGCAGGATAA AAACGCTGAA 
GGGCCATTTC CACCAATGGA GCAGGGTTAT CCGGATACCA TTACCCCCAG TTGGTACGAC 
TACGGGATGA ATGAGGGAAT ACCGCGTTTG CTGCGTTTAT GGCGTAAGCA CCACATTCAG 
GTGACATCCC ATATGGTGGG CCGCGCTGCT GAGTTACATC CACAACTTGC CAAACAAGTC 
GCGGATGAAG GCCATGAGAT TGCTGGCCAT GGACAAACAT GGACGCCACA ATTCAGCATG 
TCGCCAGCGC AGGAGCGCGC CTCTTATATT GAGAGTATCA ACACCTTAGA GAAGATCACC 
GGCCAGCGTC CCATTGGGTT TAATGCGTTT TGGATGCGCC ATAGCACCCA AACCTTAAAT 
ATCCTGCAGG ACCTAGGCTT TATCTATCAT ATTGATGACT TATCGCGGGA TGAACCGTCG 
ATTACTCCGG TACAAGGTAA GCCATTTGCC GTGGTGCCTT ATACCTTGCG TAACAATGAT 
ATAGGTCGCT TTGGTGGTAA CACTGCGATG ACTGCCGCCG ACTTTTTACA GGAGCTTAAA 
GATGAATTCG ATATGCTCTA TCAAGAAGGC GTATCCCAGC GGCGGATGAT GTCGATTAGT 
GTGCACGATA GAATTGGTGG CACGCCAGGT CTTGCCAATG CCTTAGACAA GTTTATTCAA 
TACGCGAAAG AACACTCAAA AGTGGGTTTT ATGCGTAAGG ATGCGATAGC TAAATGGGCG 
CTGGCGCAAA AGGATACGCC AACCAATCCT GCGAGAACAT TTTAA
 
Protein sequence
MNQRRQFLKT SLQAGGAFIA GVGLSQSAFS MGVSGLVTLD DKTQTSVGGS MNNRFWPNGE 
QLVISISMQF EAGAQDKNAE GPFPPMEQGY PDTITPSWYD YGMNEGIPRL LRLWRKHHIQ 
VTSHMVGRAA ELHPQLAKQV ADEGHEIAGH GQTWTPQFSM SPAQERASYI ESINTLEKIT 
GQRPIGFNAF WMRHSTQTLN ILQDLGFIYH IDDLSRDEPS ITPVQGKPFA VVPYTLRNND 
IGRFGGNTAM TAADFLQELK DEFDMLYQEG VSQRRMMSIS VHDRIGGTPG LANALDKFIQ 
YAKEHSKVGF MRKDAIAKWA LAQKDTPTNP ARTF